ImageJ Macros @ CMCI, EMBL

This repository contains ImageJ Macros, Javascripts and Jython codes. To use them open the file in Fiji Script editor and run the script.

Name		Name	Last commit message	Last commit date
Latest commit History 189 Commits
Bory		Bory
Elia		Elia
Katherina		Katherina
NIHsite		NIHsite
Oriol		Oriol
Tina		Tina
Xavier		Xavier
dataconvert		dataconvert
depricated		depricated
downloaded		downloaded
examples		examples
headless		headless
joana		joana
likun		likun
mayumi		mayumi
mette		mette
oleg		oleg
olivier		olivier
parameterTester		parameterTester
particleTracker		particleTracker
people		people
plotter		plotter
sasha		sasha
sevi		sevi
tests		tests
tischi		tischi
tomo		tomo
util		util
wani		wani
#Untitled-1#		#Untitled-1#
.gitignore		.gitignore
DVreader.ijm		DVreader.ijm
EGFanalysis.ijm		EGFanalysis.ijm
Hurricane.txt		Hurricane.txt
K_2chCountOverlappedPixelsv2.ijm		K_2chCountOverlappedPixelsv2.ijm
K_BinaryEdgeFinder.ijm		K_BinaryEdgeFinder.ijm
K_CurvatureIndex.txt		K_CurvatureIndex.txt
K_ForElisa.txt		K_ForElisa.txt
K_Knopv2c.ijm		K_Knopv2c.ijm
K_LIFfileImporter.ijm		K_LIFfileImporter.ijm
K_LaminSegmentation.ijm		K_LaminSegmentation.ijm
K_MeasureNuclearFlattness.ijm		K_MeasureNuclearFlattness.ijm
K_NucleusSegmentationEvaluator.ijm		K_NucleusSegmentationEvaluator.ijm
K_SeeSaw3Dprojector.ijm		K_SeeSaw3Dprojector.ijm
K_TimeRGBcolorcodeHyper.ijm		K_TimeRGBcolorcodeHyper.ijm
K_createDiffStack.py		K_createDiffStack.py
K_kymoquant.ijm		K_kymoquant.ijm
K_measureUCPv2.txt		K_measureUCPv2.txt
K_primodiumV2.ijm		K_primodiumV2.ijm
K_runOptionConstructorDemo.ijm		K_runOptionConstructorDemo.ijm
K_substackExtractor.ijm		K_substackExtractor.ijm
Mask_clusters_of_poresV2.ijm		Mask_clusters_of_poresV2.ijm
MeasureMTIntensityAroundDNAchamber2CPv4.txt		MeasureMTIntensityAroundDNAchamber2CPv4.txt
NnucleusDiameterMeasurement090320.ijm		NnucleusDiameterMeasurement090320.ijm
README.md		README.md
Replace NaN in 32bit image with 0_stack.ijm		Replace NaN in 32bit image with 0_stack.ijm
ScalascriptRunner.py		ScalascriptRunner.py
ScanRPositionsToPreibish.py		ScanRPositionsToPreibish.py
Tracker_helper.txt		Tracker_helper.txt
ZenLSMSeriesMerger.py		ZenLSMSeriesMerger.py
_K_function_store.txt.ijm		_K_function_store.txt.ijm
colorScaleLUT.ijm		colorScaleLUT.ijm
edfheadlesstest.py		edfheadlesstest.py
multipleOverlays2singleROI.js		multipleOverlays2singleROI.js
nucRim2.py		nucRim2.py
nucRimMeasure.ijm		nucRimMeasure.ijm
nuctrack.py		nuctrack.py
peakfitStack.py		peakfitStack.py
prepropMacP.py		prepropMacP.py
radialProfilePrintout.ijm		radialProfilePrintout.ijm
radialProfilePrintout.py		radialProfilePrintout.py
radialintensityMeasure.txt		radialintensityMeasure.txt
radialintensityMeasure_draw.txt		radialintensityMeasure_draw.txt
subtractUpDown.py		subtractUpDown.py
tangoCreateUser.py		tangoCreateUser.py
tangoCreateUser2.py		tangoCreateUser2.py
tango_listDBs.py		tango_listDBs.py
tracking2D_particleAnalV2.txt		tracking2D_particleAnalV2.txt
tracking3Dv4.txt		tracking3Dv4.txt
tracking_DataAnalysis.ijm		tracking_DataAnalysis.ijm
view3DzoomCorrection.js		view3DzoomCorrection.js

miura/ijmacros

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