Combine nexus columns with two or more nucleotides into a single nexus matrix.
For additional help:
&> ./run.py -h
To run:
&> ./run.py inputFile outputFile [either 'all' or 'sample']
all vs. sample options:
'all' option includes every column with two or more nucleotides.'sample' chooses one 'random' column from all of the columns in each matrix.
Note: this library depends on python-nexus library, install with
&> sudo pip install python-nexus
If you don't have pip installed, first call
&> sudo easy_install pip