ImageJ_Macros
This repository is an assortment of ImageJ macros developed for various people around Warwick Medical School. They include:
- a macro for saving split channels and the Z-projections thereof for all images in a directory;
- a macro for saving XY coordinates of cell shapes as a CSV file;
- a macro for automatically detecting, counting and saving measurements of cells;
- a macro for counting cells, the number of foci per cell and the distances between foci in the same cell;
- a macro for measuring 3D distances between a user-defined point and detected particles in a multichannel image.
Some of those are written in IJ macro language, some in Python (Jython, in this case). They are all extremely custom and there's plenty information hardcoded: they are provided as is in the hopes of being useful as templates for someone else!