PyFibre is an open source image analysis toolkit for fibrous tissue that can be run either in a terminal or GUI. It is designed to make the quantification of fibrous tissue automated, standardised and efficient whilst remaining as transparent as possible for non-technical users.

Current supported OS:

• Ubuntu 18
• macOS X
• Windows 10

Full documentation can be found at the ReadTheDocs page

PyFibre is deployed using Enthought Deployment Manager, EDM. Please download and install the latest version prior to continuing further.

Once installed, simply create a "bootstrap" environment using the command line:

edm install -e bootstrap --version 3.6 -y click setuptools
edm shell -e bootstrap

To begin with, either clone or download the latest release of PyFibre and change working directory into the repository:

git clone --branch '2.1.0.dev' --depth 1 https://github.com/franklongford/PyFibre.git
cd PyFibre

Then build the deployment pyfibre-py36 environment using the following command:

python -m ci build-env

Afterwards, install a package egg with all binaries using:

python -m ci install

This will install all required libraries and create the local PyFibre and PyFibre_GUI entry points inside the deployment environment. To make sure the installation has been successful, please enter the deployment environment and run the integration test provided:

python -m ci shell
PyFibre --test

Further documentation on both command line and GUI programs can be found on the relevant ReadTheDocs pages.