pairwisealign

fast and memory efficient Needleman–Wunsch to be used in HIV zipcode projects

assumes set match/mismatch, etc

Name		Name	Last commit message	Last commit date
Latest commit History 9 Commits
.gitignore		.gitignore
README.md		README.md
pairwisealign.pyx		pairwisealign.pyx
pairwisealign_1.py		pairwisealign_1.py
pairwisealign_c1.pyx		pairwisealign_c1.pyx
pairwisealign_c2.pyx		pairwisealign_c2.pyx
pairwisealign_c3.pyx		pairwisealign_c3.pyx
pairwisealign_c4.pyx		pairwisealign_c4.pyx
pairwisealign_c5.pyx		pairwisealign_c5.pyx
setup.py		setup.py
setup_c1.py		setup_c1.py
test_timeit.py		test_timeit.py

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