This package is being actively developed and not in a state that will be consistently useable. If you are looking for the Phylofactor R package that may be found here: https://github.com/reptalex/phylofactor
Phylofactor API call:
pf = phylofactor.methods.phylofactor(s1_data,
unrooted_tree,
s1_metadata,
family='binomial',
formula='BodySite~Data',
choice='F',
nfactors=2,
ncores=10)Cross validate map API call:
cvm = phylofactor.methods.cross_validate_map(table=s2_data,
groups=pf.groups,
phylogeny=pf.tree,
full_phylogeny=unrooted_tree)