SDEMotif

Infer metabolite correlation patterns from network motifs.

run.sh shows an exemplary usage of the pipeline.

Name		Name	Last commit message	Last commit date
Latest commit History 395 Commits
tests		tests
.coveragerc		.coveragerc
.gitignore		.gitignore
.travis.yml		.travis.yml
LICENSE		LICENSE
README.md		README.md
figures.py		figures.py
filters.py		filters.py
formula_investigator.py		formula_investigator.py
investigator.py		investigator.py
larger_embedding.py		larger_embedding.py
main.py		main.py
metabolic_network.py		metabolic_network.py
network_matrix.py		network_matrix.py
network_space.py		network_space.py
nm_data_generator.py		nm_data_generator.py
peak_parser.py		peak_parser.py
pipeline.py		pipeline.py
plotter.py		plotter.py
processing.py		processing.py
publication_figures.py		publication_figures.py
reaction_finder.py		reaction_finder.py
requirements.txt		requirements.txt
run.sh		run.sh
setup.py		setup.py
solver.py		solver.py
system.py		system.py
utils.py		utils.py

kpj/SDEMotif