GitHub - marcottelab/infer_complexes: Inference, analysis and visualizations for protein complexes from co-fractionation data, used in Wan, Borgeson et al 2015

Infer protein complexes from fractionation experimental data combined with additional data types (ex. gene expression, ppis)

This codebase was used to power the analysis, inference, and a subset of figure generation for the following publication in Nature: http://www.nature.com/nature/journal/v525/n7569/abs/nature14877.html

Name		Name	Last commit message	Last commit date
Latest commit History 331 Commits
exp/36_bioanalysis		exp/36_bioanalysis
scripts		scripts
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
Struct.py		Struct.py
analyze.py		analyze.py
cluster.py		cluster.py
compare.py		compare.py
config.txt		config.txt
corum.py		corum.py
count_orthologs.py		count_orthologs.py
cv.py		cv.py
cyto.py		cyto.py
decorators.py		decorators.py
elut_analyze.py		elut_analyze.py
elution.py		elution.py
enrichment.py		enrichment.py
evidence.py		evidence.py
examples.py		examples.py
features.py		features.py
figures.py		figures.py
fnet.py		fnet.py
go_attempts.py		go_attempts.py
graph.py		graph.py
groupfracs.py		groupfracs.py
ml.py		ml.py
mq_elution.py		mq_elution.py
msdata.py		msdata.py
orth.py		orth.py
pairdict.py		pairdict.py
parallel.py		parallel.py
paralogs.py		paralogs.py
plotting.py		plotting.py
postcluster.py		postcluster.py
ppi.py		ppi.py
ppi_utils.py		ppi_utils.py
protein_counts.py		protein_counts.py
results.py		results.py
score.py		score.py
score_nodependencies.py		score_nodependencies.py
seqs.py		seqs.py
similarities.py		similarities.py
stats.py		stats.py
subdivide.py		subdivide.py
utils.py		utils.py

marcottelab/infer_complexes