This repository contains a collection of scripts and pipelines to help researchers extract a matrix of features describing a 3D protein structure.

We have used these tools on RPKT residues in E. coli, D. radiodurans, and human proteins to predict which amino acids are most vunerable to carbonylation, a form of oxidative damage that can lead to protein degredation. For more information, see our preprint.

This project is public and functional, but not yet well-documented for external use. If you're interested, check out the documentation, send us an email, or post an issue and we can try to help.

Created by the Silver Lab at Harvard Medical School.

Contacts:

• Julian (Research Assistant, julian_stanley at hms dot harvard dot edu)

• Dr. Roger Chang (Project Lead, roger_chang at hms dot harvard dot edu)