RiboVis is a set of useful and short Python functions for making pictures of RNA and proteins in pymol in our 'lab style'. For a quick preview:
| Function | Description |
|---|---|
rr() |
For RNA: with 2′ OH as spheres, bases as filled rings, and backbone as cartoon ribbons, rainbow colored from 5′ to 3′. No hydrogens, white background. |
rd() |
For proteins: side chains are all-atom and colored CPK, backbone is rainbow cartoon from N to C terminus. |
sa() |
Superimposes all models to the first one. Thanks to Kyle Beauchamp for this one |
And more! ...
To install RiboVis, simply:
- From GitHub, download the zip or tar file of the repository and unpack; or
git clone https://github.com/ribokit/RiboVis.git- In PyMol, type:
run ribovis.pyTested quickly with:
fetch 1q9a
rr()- (Optional) Create or edit a
.pymolrcfile in your home directory, add these lines:
import sys
sys.path.append('/path/to/RiboVis')
run /path/to/RiboVis/ribovis.pyReplce with your
/path/to/RiboVis.
This will automatically load ribovis upon start every time.
Documentation is available at https://ribokit.github.io/RiboVis/.
Copyright © of RiboVis Source Code is described in LICENSE.md.
Developed by Das lab, Leland Stanford Junior University.
README by t47, April 2016.