miRNA_CNVs

A series of scripts used to analyze the interaction between miRNAs and CNVs in vertebrates

Name		Name	Last commit message	Last commit date
Latest commit History 295 Commits
.gitignore		.gitignore
CNV_miRNAs.py		CNV_miRNAs.py
CorrelationTargetSitesShort3UTRs.py		CorrelationTargetSitesShort3UTRs.py
MakeTableCorrelationsLengthTargets.py		MakeTableCorrelationsLengthTargets.py
MakeTableTargetSitesCNVnonCNV.py		MakeTableTargetSitesCNVnonCNV.py
MakeTableTargetSitesDGVRelease.py		MakeTableTargetSitesDGVRelease.py
MakeTableTargetsShort3UTRDGVReleases.py		MakeTableTargetsShort3UTRDGVReleases.py
MakeTableTargetsShort3UTRGenes.py		MakeTableTargetsShort3UTRGenes.py
PlotBootstrapOutcomes.py		PlotBootstrapOutcomes.py
PlotCompSpeciesShort3UTR.py		PlotCompSpeciesShort3UTR.py
PlotFreqStudies.py		PlotFreqStudies.py
PlotNumberShort3UTRGenes.py		PlotNumberShort3UTRGenes.py
PlotNumberShort3UTRGenesDVG.py		PlotNumberShort3UTRGenesDVG.py
PlotRandomizationOutcomes.py		PlotRandomizationOutcomes.py
PlotTargetShort3UTRGoldCNVMap.py		PlotTargetShort3UTRGoldCNVMap.py
PlotTargetSitesCNVnonCNV.py		PlotTargetSitesCNVnonCNV.py
PlotTargetSitesExpressionGroup.py		PlotTargetSitesExpressionGroup.py
PlotTargetSitesExpressionGroupHuman.py		PlotTargetSitesExpressionGroupHuman.py
PlotTargetSitesGoldCNVMap.py		PlotTargetSitesGoldCNVMap.py
PlotTargetSitesShort3UTRsCNVnonCNV.py		PlotTargetSitesShort3UTRsCNVnonCNV.py
PlotTargetSitesmiRNAScore.py		PlotTargetSitesmiRNAScore.py
PlotTargetsSingleHumanPop.py		PlotTargetsSingleHumanPop.py
README.md		README.md
check_gene_names.py		check_gene_names.py
check_genes_from_extract_seq.py		check_genes_from_extract_seq.py
check_jobs.py		check_jobs.py
check_jobs_2.py		check_jobs_2.py
convert_targetscan_seq_input_to_fasta.py		convert_targetscan_seq_input_to_fasta.py
download_genomes.py		download_genomes.py
download_grch37_fasta.py		download_grch37_fasta.py
generate_pita_miranda_submission_files.py		generate_pita_miranda_submission_files.py
generate_pita_submission_files.py		generate_pita_submission_files.py
generate_targetscan_submission_files.py		generate_targetscan_submission_files.py
list_killed_jobs.py		list_killed_jobs.py
make_CNV_genes_files.py		make_CNV_genes_files.py
make_genes_3UTR_length_files.py		make_genes_3UTR_length_files.py
make_human_CNV_file.py		make_human_CNV_file.py
make_targetscan_input_files.py		make_targetscan_input_files.py
make_targetscan_miRNA_input_files.py		make_targetscan_miRNA_input_files.py
make_valid_chromo_files.py		make_valid_chromo_files.py
merge_5UTR_targetscan_outputfiles.py		merge_5UTR_targetscan_outputfiles.py
merge_chicken_CNV_SuppData.py		merge_chicken_CNV_SuppData.py
merge_chimp_CNV_SuppData.py		merge_chimp_CNV_SuppData.py
merge_chromo_seqs.py		merge_chromo_seqs.py
merge_cow_CNV_SuppData.py		merge_cow_CNV_SuppData.py
merge_macaque_CNV_SuppData.py		merge_macaque_CNV_SuppData.py
merge_miranda_outputfiles.py		merge_miranda_outputfiles.py
merge_mouse_CNV_SuppData.py		merge_mouse_CNV_SuppData.py
merge_rat_CNV_SuppData.py		merge_rat_CNV_SuppData.py
move_submission_files.py		move_submission_files.py
run_TargetScan_prediction.py		run_TargetScan_prediction.py
run_miranda_prediction.py		run_miranda_prediction.py
run_pita_prediction.py		run_pita_prediction.py
run_targetscan_prediction_5UTR.py		run_targetscan_prediction_5UTR.py
split_mature_input.py		split_mature_input.py
split_sequence_input.py		split_sequence_input.py
split_targetscan_input.py		split_targetscan_input.py

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