/
run.py
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run.py
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#
# Run convolutional LSTM
#
# ---------------------------------
import os
import sys
import numpy as np
from chainer import cuda, gradient_check, Variable, optimizers, serializers
from chainer import computational_graph as c
import chainer
import subprocess
import dill
import copy
import time
import importlib
import radarforecast as forecast
import radarplot
import dataimport as g # data generators
# importlib.reload(forecast)
# np.random.seed(3287097)
load_model = True
train = True
plot = True
gpuID = 0 # -1 = CPU, 0 = GPU
modelname = "CH_2014"
dim_in = (220, 360)
snapshot = 4 # epochs between snapshots
verbose = 1 # every 'verbose' epoch output is printed
# -----------
# define/load model
if not load_model:
# warptype="thinplate"
model = forecast.ConvLTSMSpatialTransformerDeconv(dim_in=dim_in, nfilter1=4,
n_hidden=400, nfilter2=4,
dim_control_points=(3,3), warptype="gaussian")
state = model.make_initial_state()
else:
model, state = dill.load(open("../Models/{}.pic".format(modelname), "rb" ))
print(type(model))
print("Model loaded. Pretrained on {} epochs.".format(model.training.epochs()))
# move model to GPU
if gpuID >= 0:
cuda.get_device(gpuID).use()
xp = cuda.cupy # xp is either numpy or cuda.cupy depending on GPU id
model.to_gpu()
forecast.move_state_to_gpu(state, gpuID=gpuID)
else:
xp = np
print("The model has {} parameters ({} mb)".format(forecast.count_parameters(model),
np.round(forecast.count_parameters(model)*4/1024**2, 2)))
# -----------
# define training
# --- define data
data_path = "/home/scheidan/Dropbox/Projects/Nowcasting/MeteoSwissRadar/MeteoSwissRadarHDF5/CH_360x220/"
train_files = ["ch_360x220_2014.02.hdf5",
"ch_360x220_2014.03.hdf5",
"ch_360x220_2014.04.hdf5",
"ch_360x220_2014.05.hdf5",
"ch_360x220_2014.06.hdf5",
"ch_360x220_2014.07.hdf5",
"ch_360x220_2014.08.hdf5",
"ch_360x220_2014.09.hdf5",
"ch_360x220_2014.10.hdf5",
"ch_360x220_2014.11.hdf5",
"ch_360x220_2014.12.hdf5",
"ch_360x220_2015.01.hdf5",
]
test_files = ["ch_360x220_2015.04.hdf5"]
train_files = [os.path.join(data_path, f) for f in train_files]
test_files = [os.path.join(data_path, f) for f in test_files]
# -- choose optimizer
#optimizer = optimizers.MomentumSGD(lr=0.00001, momentum=0.9)
#optimizer = optimizers.Adam()
#optimizer = optimizers.AdaDelta()
optimizer = optimizers.RMSprop(lr=0.000001, alpha=0.99, eps=1e-08)
#optimizer = optimizers.NesterovAG(lr=0.001, momentum=0.9)
clipGradHook = chainer.optimizer.GradientClipping(3.0)
# -- define run
if train:
model.training.add_run(optimizer=optimizer, epochs=30, batchsize=64, train_files=train_files,
test_files=test_files, gpuID=gpuID, eps_min=1.0/48.0, eps_decay=0.86)
# model.training.repeat_run(epochs = 1, eps_decay=0.82, eps_min=1.0/48.0,
# train_files=train_files, test_files=test_files)
# -----------
# plot options
nstep_plot = 24*1 # length of validation plot
## -----------
## tests
forecast.check_model(model, test_files, gpuID=gpuID)
## -----------
## fit model
if train:
batchsize = model.training.getlast("batchsize")
train_files = model.training.getlast("train_files")
test_files = model.training.getlast("test_files")
optimizer.setup(model)
optimizer.add_hook(clipGradHook, name="GradClip")
if load_model and model.training.getall("optimizer")[-2] == str(type(optimizer)):
serializers.load_hdf5("../Models/{}_opt".format(modelname), optimizer)
print("Optimizer state loaded!")
loss_arr = []
print("Increase expected forecast horizon by {}% per epoch (max {} steps).".format(
round((1/model.training.getlast("eps_decay") - 1)*100), round(1/model.training.getlast("eps_min"))))
for epoch in range(model.training.getlast("epochs")):
optimizer.new_epoch()
# adjust eps
eps = max(model.training.getlast("eps_min"),
model.training.getlast("eps_decay")**(model.training.epochs()+epoch))
t1 = time.time()
## --- predict validation loss
# always same initial state for test data
state_test = model.make_initial_state()
if gpuID >= 0:
forecast.move_state_to_gpu(state_test, gpuID)
sum_loss = 0
N = 0
for x_bb in g.batch_sequence_multi_hdf5(test_files, batchsize):
x_batch = xp.asarray(x_bb, dtype=np.float32)
N += x_batch.shape[0] # length of sequence
# run model forward
RMS, state_test = model.loss_series(state_test, x_batch,
burn_in = 0, train=False)
RMS.unchain_backward() # delete computational 'history'
sum_loss += RMS * x_batch.shape[0]
mean_loss = sum_loss / N
mean_loss.to_cpu()
loss_arr.append(mean_loss.data)
print('Mean loss over test data: {}\n'.format(mean_loss.data))
## --- training
state = model.make_initial_state()
if gpuID >= 0:
forecast.move_state_to_gpu(state, gpuID)
nprocess = 0
for x_bb in g.batch_sequence_multi_hdf5(train_files, batchsize):
x_batch = xp.asarray(x_bb, dtype=np.float32)
nprocess += x_batch.shape[0]
sys.stdout.write("\r{} images processed (ca. {} days)".format(nprocess, round(nprocess/576.0, 1)))
sys.stdout.flush()
# run model forward
RMS, state = model.loss_series(state, x_batch, eps = eps, burn_in = 0)
model.zerograds()
RMS.backward()
RMS.unchain_backward() # delete computational 'history'
optimizer.update()
t2 = time.time()
epoch_tot = epoch+1+model.training.epochs()
if (epoch_tot)%verbose == 0:
print('\nepoch: ' + str(epoch_tot))
print('training time: {} sec. ({} epochs/h)'.format(round(t2-t1,1), round(3600/(t2-t1),1)))
print(' batch loss: ' + str(RMS.data))
# --- save snapshot
if (epoch_tot)%snapshot == 0:
snap_name = "../Models/{:04d}_Snapshot_{}".format(epoch_tot, modelname)
dill.dump((model.to_cpu(), state.copy()),
open(snap_name+".pic", "wb" ), protocol=2)
serializers.save_hdf5(snap_name+"_opt", optimizer)
print("Snapshot saved: " + snap_name)
if gpuID >= 0:
model.to_gpu()
# --- finalize training run
model.training.finalize_run(loss_arr)
print(("Model trained on {} epochs ({} new).\n").format(model.training.epochs(),
model.training.getlast("epochs")))
# --- save output
dill.dump((model.to_cpu(), state.copy()),
open("../Models/{}.pic".format(modelname), "wb"), protocol=2)
serializers.save_hdf5("../Models/{}_opt".format(modelname), optimizer)
print("Final model saved as: ../Models/{}.pic".format(modelname))
if gpuID >= 0:
model.to_gpu()
## --- plots
if plot:
print("Producing plots")
online_optimizer = optimizers.MomentumSGD(lr=0.001, momentum=0.6)
# -- graph
n_graph_steps = 3
assert n_graph_steps >=3
X_graph = next(g.batch_sequence_multi_hdf5(model.training.getlast("test_files"),
batch_size=n_graph_steps))
RMSplot, _ = model.loss_series(state, xp.asarray(X_graph, dtype=np.float32), train=True)
with open("../Models/{}.dot".format(modelname), "w") as o:
o.write(c.build_computational_graph((RMSplot, ), rankdir='LR').dump())
cmdstr = "dot -Tpng ../Models/{}.dot > ../Plots/{}_graph.png".format(modelname, modelname)
status = subprocess.call(cmdstr, shell=True)
# -- error plot
radarplot.learningplot("../Plots/{}_loss.pdf".format(modelname), model)
# -- validation
nstep_ahead = 48
# X_plot = next(g.batch_sequence_multi_hdf5(model.training.getlast("test_files"),
# batch_size=nstep_plot+nstep_ahead))
X_plot = xp.asarray(next(g.batch_sequence_multi_hdf5(test_files,
batch_size=nstep_plot+nstep_ahead)),
dtype=np.float32)
pp = model.predict_n_steps_series(state, X_plot, nstep_ahead=nstep_ahead)
pp_online = model.predict_n_steps_series_updating(state, X_plot, nstep_ahead=nstep_ahead,
online_optimizer=online_optimizer)
# --- correction
radarplot.correction("../Plots/{}_LocalCorrection.pdf".format(modelname), model, state, X_plot)
radarplot.prediction_series("../Plots/{}_series.pdf".format(modelname),
X_true=X_plot[nstep_ahead:,:,:], X_pred=pp[nstep_ahead:,:,:],
offset=0, zmax=50)
radarplot.error("../Plots/{}_error.pdf".format(modelname),
X_true=X_plot[nstep_ahead:,:,:], X_pred=pp[nstep_ahead:,:])
# radarplot.validation_map("../Plots/{}_validation.pdf".format(modelname), n_pred=[15, 30, 45, 60, 75],
# X_true=x[nstep_ahead:,:,:], X_pred=pp[nstep_ahead:,:,:], zmax=50,
# lon=(470000,830000), lat=(65000, 285000), CH1903=True)
radarplot.validation("../Plots/{}_validation.pdf".format(modelname), n_pred=[5, 15, 45, 60, 75],
X_true=X_plot[nstep_ahead:,:,:], X_pred=pp[nstep_ahead:,:,:], zmax=50)
radarplot.validation("../Plots/{}_validation_online.pdf".format(modelname), n_pred=[5, 15, 45, 60, 75],
X_true=X_plot[nstep_ahead:,:,:], X_pred=pp_online[nstep_ahead:,:,:], zmax=50)
# # --- data plot
# x = next(g.batch_sequence_multi_hdf5(model.training.getlast("test_files"),
# batch_size=10000))
# radarplot.data_summary("Plots/{}_data.pdf".format(modelname), x)
# --- plot convolution filter
radarplot.convolution_filter("../Plots/{}_filter.pdf".format(modelname), model)
# --- plot RMSE
radarplot.RMSE("../Plots/{}_RMSE.pdf".format(modelname), model, state, test_files,
length=24*10, max_pred=72)
radarplot.RMSE("../Plots/{}_RMSE_updating.pdf".format(modelname), model, state, test_files,
length=24*10, max_pred=72, optimizer=online_optimizer)
print("plots finished")
# ============================================