microbiome_metab

Scripts for analyzing metabolism in microbiomes. Focused on the use and extension of QIIME and PICRUSt methods.

Name		Name	Last commit message	Last commit date
Latest commit History 28 Commits
.gitignore		.gitignore
README.md		README.md
anal_comp_metab.py		anal_comp_metab.py
annotate_group_significance.py		annotate_group_significance.py
comb_net.py		comb_net.py
dict_manips.py		dict_manips.py
filter_KOs_by_pathway.py		filter_KOs_by_pathway.py
get_genome.sh		get_genome.sh
get_metabolites_from_pathway.py		get_metabolites_from_pathway.py
make_gg_genomes.py		make_gg_genomes.py
make_map_pathway.py		make_map_pathway.py
make_network.py		make_network.py
mega_net.py		mega_net.py
merge_otus.py		merge_otus.py
metab_network.py		metab_network.py
misc.py		misc.py
network.py		network.py
otu_ko_network.py		otu_ko_network.py
parse_KEGG.py		parse_KEGG.py
parse_picrust_KO_table.py		parse_picrust_KO_table.py
predict_reactions.py		predict_reactions.py
rare_kos.py		rare_kos.py

shafferm/microbiome_metab