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MPinterfaces is a python package that enables high throughput Density Functional Theory(DFT) analysis of arbitrary material interfaces(ligand capped nanoparticles, surfaces in the presence of solvents and hetero-structure interfaces) using VASP, VASPsol, LAMMPS and materialsproject database as well as their open source tools.

Installation

The following steps applies only to linux and OSX(with xcode) operating systems.

Prepping

  1. Make sure that you are using python>=2.7 (do a "python --version").

    Note: ASE does not work with python3

  2. it is highly recommended that you use gcc compiler. So type:

    export CC=gcc

    Note: Don't use gcc if the already available numpy/scipy packages were setup using intel MKL

  3. Unless you have admin privilege on the machine you are installing, it is better to install this package and all its dependencies in a virtual environment.

    • get the latest version from https://pypi.python.org/pypi/virtualenv#downloads
    • tar xvfz virtualenv-X.X.X.tar.gz
    • cd virtualenv-X.X.X
    • setup the virtual environment in ~/myvenv (or set to some other path and folder name)
      • python virtualenv.py ~/myvenv
    • activate the virtual environment
      • source ~/myvenv/bin/activate

    For detailed instructions and documentation see

    http://virtualenv.readthedocs.org/en/latest/installation.html

  4. Install numpy:

    pip install numpy

Get the latest version

If you already have a local copy, steps 1 and 2 of the following instructions can be skipped. Just do a "git pull" from the MPInterfaces folder and go to step 3(if the local copy was installed in the develop mode this step can be skipped too).

  1. Clone the latest version from github
  1. cd MPInterfaces
  2. python setup.py install(or develop)
  3. set the evironment variables:
    • MAPI_KEY=the_key_obtained_from_materialsproject
    • VASP_PSP_DIR=path_to_vasp_potcar_files

Documentation

A very minimal documentation is avaiable at

http://henniggroup.github.io/MPInterfaces/

and work is underway to improve it.

Usage

We use pymatgen tools for all structure manipulation tasks, so it would be a good idea to start from here:

http://pymatgen.org/#using-pymatgen

The examples folder contain some sample scripts that demonstrate the usage of mpinterfaces as well as materialsproject packages. For basic usage please see docs/usage.rst.

Contributing

We try to follow the coding style used by pymatgen(PEP8):

http://pymatgen.org/contributing.html#coding-guidelines

Authors

Kiran Mathew

Joshua Gabriel

Arunima Singh

Richard G. Hennig

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Python package that enables high throughput analysis of interfaces(ligands/solvent/hetero-structures) using VASP, VASPsol and materialsproject tools

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