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Genomic and Proteomic data exploration and pattern mining

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AGI-Bio

Prototype project utilizing the OpenCog framework for genomic research. In particular it aims at experimenting with cognitive synergy between MOSES, PLN and other OpenCog components.

see mozi.ai repositories for current development of opencog bioinformatics tools as SingularityNET sevices.

Requirements

Description

bioscience - code to be built and installed with opencog to provide GeneNode and MoleculeNode atoms

knowledge-import -- scripts for converting external knowledge bases into scheme files for importing into the atomspace

moses-scripts -- scripts for importing MOSES models distinguishing binary phenotype categories based on gene expression data into the atomspace.

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Genomic and Proteomic data exploration and pattern mining

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  • Python 44.8%
  • Scheme 41.6%
  • Shell 7.3%
  • R 3.4%
  • CMake 2.2%
  • C++ 0.5%
  • Dockerfile 0.2%