This repository contains data, analysis scripts, and accessory scripts used in the manuscript " "

All the final data used to create figures and calculate statistics are included here. Raw sequence data are deposited in the SRA:

Some sections of R code require files generated as supplements to: Glazer, AM, et al. (2015). Genome Assembly Improvement and Mapping Convergently Evolved Skeletal Traits in Sticklebacks with Genotyping-by-Sequencing. G3-Genes|Genomes|Genetics:5(7). CSV containing scaffold orderings: http://datadryad.org/bitstream/handle/10255/dryad.89107/FileS4%20NewScaffoldOrder.csv Script to convert between assembly coordinates: http://datadryad.org/bitstream/handle/10255/dryad.89114/convertCoordinate.R