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TVB-HPC

This is a Python package for generating code for parameter sweeps and Bayesian inversion.

Get the Docker image

docker pull maedoc/tvb-hpc

and run the tests

docker run --rm -it -v ./:/root/hpc python -m unittest tvb_hpc.tests

(on Windows, replace ./ by %CD%.)

Get hacking with the examples or tests.

TODO

  • ensure par sweeps etc built as domains
  • rng
  • make high level usage easier (tavg, bold, gain, fcd, etc)
  • test on CUDA
  • parallel numba
  • simple SALib usage?
  • chunking of state & vectorization?
  • reach cuda hackathon performance numbers

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  • Python 99.5%
  • Shell 0.5%