def remove_dupes_module(folder, outfile):
#add quotes to image path in case of spaces
quoted_path = "'" +folder +"'"
#ask if user wants to backup their files before removing dupes
answer = boolbox(msg='Do you want to make a backup copy of your folder before removing the dupes?', title=' ', choices=('Yes', 'No'), image=None)
if(answer == 1):
copy_command = "sudo cp -r " + quoted_path + " /tmp"
print("Copying folder to /tmp\n")
subprocess.call([copy_command], shell=True)
msgbox(msg='(Your folder has been copied to /tmp)', title='Copy Complete ', ok_button='OK', image=None, root=None)
no_quotes = quoted_path.replace("'","")
log_file_path = "/tmp/duplicates_log.txt"
remove_dupes_command = "sudo fdupes -r -d -N " + quoted_path + " >> /tmp/fdupes_duplicates_log.txt"
print ("The remove dupes command is: " + remove_dupes_command, end ="\n\n")
print ("Removing duplicate files recursively from folder: " + quoted_path, end ="\n\n")
#run the remove dupes command
subprocess.call([remove_dupes_command], shell=True)
#get filesize of mmls_output.txt
file_size = os.path.getsize("/tmp/fdupes_duplicates_log.txt")
#if filesize of mmls output is 0 then run parted
if(file_size == 0):
print("No duplicates found\n")
outfile = open(log_file_path, 'wt+')
outfile.write("No duplicate files found!")
os.remove("/tmp/fdupes_duplicates_log.txt")
#close outfile
outfile.close()
else:
#if log file exists then run unix2dos against the logfile
unix2dos("/tmp/fdupes_duplicates_log.txt")
#remove empty directories
for root,dirs,files in os.walk(no_quotes):
for directories in dirs:
dir_name = os.path.join(root,directories)
#if directory is empty then delete it
if not os.listdir(dir_name):
os.rmdir(dir_name)
#move log file to folder
move_command = "mv /tmp/*duplicates_log.txt " + quoted_path
subprocess.call([move_command], shell=True)
def remove_dupes_module_noask(evidence, outfile, folder):
#add quotes to image path in case of spaces
quoted_path = "'" +folder +"'"
log_file_path = "/tmp/duplicates_log.txt"
no_quotes = quoted_path.replace("'","")
remove_dupes_command = "sudo fdupes -r -d -N " + quoted_path + " > /tmp/fdupes_duplicates_log.txt"
print ("The remove dupes command is: " + remove_dupes_command)
print ("Removing duplicate files recursively from folder: " + quoted_path, end ="\n\n")
#run the remove dupes command
subprocess.call([remove_dupes_command], shell=True)
#get filesize of mmls_output.txt
file_size = os.path.getsize("/tmp/fdupes_duplicates_log.txt")
#if filesize of mmls output is 0 then run parted
if(file_size == 0):
print("No duplicates found\n")
outfile = open(log_file_path, 'wt+')
outfile.write("No duplicate files found!")
#os.remove("/tmp/fdupes_duplicates_log.txt")
#close outfile
outfile.close()
else:
#if log file exists then run unix2dos against the logfile
unix2dos("/tmp/fdupes_duplicates_log.txt")
#remove empty directories
for root,dirs,files in os.walk(no_quotes):
for directories in dirs:
dir_name = os.path.join(root,directories)
#if directory is empty then delete it
if not os.listdir(dir_name):
os.rmdir(dir_name)
#move log file to folder
shutil.move("/tmp/fdupes_duplicates_log.txt", no_quotes)
def remove_duplicates_mr(root_folder_path, evidence):
print("The output folder is: " + root_folder_path)
print("The evidence to process is: " + evidence)
evidence = '"' + evidence + '"'
#get datetime
now = datetime.datetime.now()
#create output folder path
folder_path = root_folder_path + "/" + "Remove_Duplicates"
check_for_folder(folder_path, "NONE")
remove_dupes_command = "sudo fdupes -r -d -N " + evidence + " > " + '"' + folder_path + "/fdupes_duplicates_log.txt" + '"'
print ("The remove dupes command is: " + remove_dupes_command + "\n\n")
print ("Removing duplicate files recursively from folder: " + evidence + "\n\n")
#run the remove dupes command
subprocess.call([remove_dupes_command], shell=True)
#get filesize of mmls_output.txt
file_size = os.path.getsize(folder_path + "/fdupes_duplicates_log.txt")
#if filesize of mmls output is 0 then run parted
if(file_size == 0):
print("No duplicates found\n")
outfile = open(folder_path + "/fdupes_duplicates_log.txt", 'wt+')
outfile.write("No duplicate files found!")
#close outfile
outfile.close()
else:
#if log file exists then run unix2dos against the logfile
unix2dos(folder_path + "/fdupes_duplicates_log.txt")
#remove empty directories
for root,dirs,files in os.walk(root_folder_path):
for directories in dirs:
dir_name = os.path.join(root,directories)
#if directory is empty then delete it
if not os.listdir(dir_name):
os.rmdir(dir_name)
def remove_duplicates_mr(root_folder_path, evidence):
print("The output folder is: " + root_folder_path)
print("The evidence to process is: " + evidence)
evidence = '"' + evidence + '"'
#get datetime
now = datetime.datetime.now()
#create output folder path
folder_path = root_folder_path + "/" + "Remove_Duplicates"
check_for_folder(folder_path, "NONE")
remove_dupes_command = "sudo fdupes -r -d -N " + evidence + " > " + '"' + folder_path + "/fdupes_duplicates_log.txt" + '"'
print("The remove dupes command is: " + remove_dupes_command + "\n\n")
print("Removing duplicate files recursively from folder: " + evidence +
"\n\n")
#run the remove dupes command
subprocess.call([remove_dupes_command], shell=True)
#get filesize of mmls_output.txt
file_size = os.path.getsize(folder_path + "/fdupes_duplicates_log.txt")
#if filesize of mmls output is 0 then run parted
if (file_size == 0):
print("No duplicates found\n")
outfile = open(folder_path + "/fdupes_duplicates_log.txt", 'wt+')
outfile.write("No duplicate files found!")
#close outfile
outfile.close()
else:
#if log file exists then run unix2dos against the logfile
unix2dos(folder_path + "/fdupes_duplicates_log.txt")
#remove empty directories
for root, dirs, files in os.walk(root_folder_path):
for directories in dirs:
dir_name = os.path.join(root, directories)
#if directory is empty then delete it
if not os.listdir(dir_name):
os.rmdir(dir_name)
def remove_dupes_module_noask(evidence, outfile, folder):
#add quotes to image path in case of spaces
quoted_path = "'" + folder + "'"
log_file_path = "/tmp/duplicates_log.txt"
no_quotes = quoted_path.replace("'", "")
remove_dupes_command = "sudo fdupes -r -d -N " + quoted_path + " > /tmp/fdupes_duplicates_log.txt"
print("The remove dupes command is: " + remove_dupes_command)
print("Removing duplicate files recursively from folder: " + quoted_path,
end="\n\n")
#run the remove dupes command
subprocess.call([remove_dupes_command], shell=True)
#get filesize of mmls_output.txt
file_size = os.path.getsize("/tmp/fdupes_duplicates_log.txt")
#if filesize of mmls output is 0 then run parted
if (file_size == 0):
print("No duplicates found\n")
outfile = open(log_file_path, 'wt+')
outfile.write("No duplicate files found!")
#os.remove("/tmp/fdupes_duplicates_log.txt")
#close outfile
outfile.close()
else:
#if log file exists then run unix2dos against the logfile
unix2dos("/tmp/fdupes_duplicates_log.txt")
#remove empty directories
for root, dirs, files in os.walk(no_quotes):
for directories in dirs:
dir_name = os.path.join(root, directories)
#if directory is empty then delete it
if not os.listdir(dir_name):
os.rmdir(dir_name)
#move log file to folder
shutil.move("/tmp/fdupes_duplicates_log.txt", no_quotes)
def remove_dupes_module(folder, outfile):
#add quotes to image path in case of spaces
quoted_path = "'" + folder + "'"
#ask if user wants to backup their files before removing dupes
answer = boolbox(
msg=
'Do you want to make a backup copy of your folder before removing the dupes?',
title=' ',
choices=('Yes', 'No'),
image=None)
if (answer == 1):
copy_command = "sudo cp -r " + quoted_path + " /tmp"
print("Copying folder to /tmp\n")
subprocess.call([copy_command], shell=True)
msgbox(msg='(Your folder has been copied to /tmp)',
title='Copy Complete ',
ok_button='OK',
image=None,
root=None)
no_quotes = quoted_path.replace("'", "")
log_file_path = "/tmp/duplicates_log.txt"
remove_dupes_command = "sudo fdupes -r -d -N " + quoted_path + " >> /tmp/fdupes_duplicates_log.txt"
print("The remove dupes command is: " + remove_dupes_command, end="\n\n")
print("Removing duplicate files recursively from folder: " + quoted_path,
end="\n\n")
#run the remove dupes command
subprocess.call([remove_dupes_command], shell=True)
#get filesize of mmls_output.txt
file_size = os.path.getsize("/tmp/fdupes_duplicates_log.txt")
#if filesize of mmls output is 0 then run parted
if (file_size == 0):
print("No duplicates found\n")
outfile = open(log_file_path, 'wt+')
outfile.write("No duplicate files found!")
os.remove("/tmp/fdupes_duplicates_log.txt")
#close outfile
outfile.close()
else:
#if log file exists then run unix2dos against the logfile
unix2dos("/tmp/fdupes_duplicates_log.txt")
#remove empty directories
for root, dirs, files in os.walk(no_quotes):
for directories in dirs:
dir_name = os.path.join(root, directories)
#if directory is empty then delete it
if not os.listdir(dir_name):
os.rmdir(dir_name)
#move log file to folder
move_command = "mv /tmp/*duplicates_log.txt " + quoted_path
subprocess.call([move_command], shell=True)
from protein_information import * from unix2dos import * file_directory = '/home/qcq/python/' if os.path.exists(file_directory): for index_T in range(1 , len(KT_list_input) + 1): file_directory_T = file_directory + str(index_T) + '/' if os.path.exists(file_directory_T): for index_FA in FA_list: file_directory_FA = file_directory_T + str(index_FA) + '/' if os.path.exists(file_directory_FA): for index_MC in MC_list: file_directory_MC = file_directory_FA + str(index_MC) + '/' if os.path.exists(file_directory_MC): for protein in want_to_run: file_directory_protein = file_directory_MC + protein + '/' if os.path.exists(file_directory_protein): file_deal_with = [] file_directory_data = file_directory_protein + 'data.txt' file_directory_information = file_directory_protein + 'information.txt' file_directory_test = file_directory_protein + 'test.txt' file_directory_temperature = file_directory_protein + 'temperature.txt' file_deal_with.append(file_directory_data) file_deal_with.append(file_directory_information) file_deal_with.append(file_directory_test) file_deal_with.append(file_directory_temperature) for index_file in file_deal_with: if os.path.exists(index_file): unix2dos(index_file) #unix to dos #dos2unix(index_file)