Python AlignBuddy.extract_feature_sequences Beispiele

Beispiel #1

def test_extract_feature_sequences(alb_resources, hf):
    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, "CDS")
    assert hf.buddy2hash(tester) == "2d8b6524010177f6507dde387146378c"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, ["TMD"])
    assert hf.buddy2hash(tester) == "3c20784722e00567cee04f3e7adca99c"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, ["TMD1", "splice_a"])
    assert hf.buddy2hash(tester) == "6a556349095dac86339b0e0057467fdd"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, ["TMD2:TMD3"])
    assert hf.buddy2hash(tester) == "1076bce8903f736787ce16fd95899af8"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, ["TMD3:TMD2"])
    assert hf.buddy2hash(tester) == "1076bce8903f736787ce16fd95899af8"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, ["TMD2:foo"])
    assert hf.buddy2hash(tester) == "0ef69def122bd6923bc9ca02e2a19233"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, "foo")
    assert hf.buddy2hash(tester) == "0ef69def122bd6923bc9ca02e2a19233"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, [])
    assert hf.buddy2hash(tester) == "0ef69def122bd6923bc9ca02e2a19233"

Beispiel #2

Datei: test_alb_api.py Projekt: cbird808/BuddySuite

def test_extract_feature_sequences(alb_resources, hf):
    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, "CDS")
    assert hf.buddy2hash(tester) == "842d9c911a33c0fd0484383eabefb0fe"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, ["TMD"])
    assert hf.buddy2hash(tester) == "cc7a1c6a22f721ec0668fc8ea6b23429"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, ["TMD1", "splice_a"])
    assert hf.buddy2hash(tester) == "497d536b1be9a90ef0ef75281d0c867f"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, ["TMD2:TMD3"])
    assert hf.buddy2hash(tester) == "07773f4fb1dc430c0c3ce6cd5a799439"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, ["TMD3:TMD2"])
    assert hf.buddy2hash(tester) == "07773f4fb1dc430c0c3ce6cd5a799439"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, ["TMD2:foo"])
    assert hf.buddy2hash(tester) == "ac15492b38ca2ac4baa63e63a9b747f7"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, "foo")
    assert hf.buddy2hash(tester) == "ac15492b38ca2ac4baa63e63a9b747f7"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, [])
    assert hf.buddy2hash(tester) == "ac15492b38ca2ac4baa63e63a9b747f7"

Beispiel #3

def test_extract_feature_sequences(alb_resources, hf):
    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, "CDS")
    assert hf.buddy2hash(tester) == "2a42c56df314609d042bdbfa742871a3"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, ["TMD"])
    assert hf.buddy2hash(tester) == "eb878a1b14b73dd6148291f630ba98d8"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, ["TMD1", "splice_a"])
    assert hf.buddy2hash(tester) == "f086752f8915872dc2260486142f643b"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, ["TMD2:TMD3"])
    assert hf.buddy2hash(tester) == "78d674f258e634ef0737db1cc6067be6"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, ["TMD3:TMD2"])
    assert hf.buddy2hash(tester) == "78d674f258e634ef0737db1cc6067be6"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, ["TMD2:foo"])
    assert hf.buddy2hash(tester) == "0ef69def122bd6923bc9ca02e2a19233"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, "foo")
    assert hf.buddy2hash(tester) == "0ef69def122bd6923bc9ca02e2a19233"

    tester = alb_resources.get_one("o d g")
    tester = Alb.extract_feature_sequences(tester, [])
    assert hf.buddy2hash(tester) == "0ef69def122bd6923bc9ca02e2a19233"