def _run(self):
"""
Start the simulation.
"""
self.execConfig.parameterStore.addObj(self)
for cellType in self.cellTypes:
self.execConfig.parameterStore.addObj(cellType)
CompuCellSetup.setSimulationXMLDescription(self._configureSimulation())
CompuCellSetup.initializeSimulationObjects(self.sim, self.simthread)
pyAttributeDictionaryAdder, dictAdder = CompuCellSetup.attachDictionaryToCells(self.sim)
# Add Python steppables here:
steppableRegistry = CompuCellSetup.getSteppableRegistry()
for steppable in self._getSteppables():
steppableRegistry.registerSteppable(steppable)
CompuCellSetup.mainLoop(self.sim, self.simthread, steppableRegistry)
from os import getcwd
import string
from PySteppablesExamples import SimulationFileStorage
sys.path.append(environ["PYTHON_MODULE_PATH"])
import CompuCellSetup
sim, simthread = CompuCellSetup.getCoreSimulationObjects()
# Create extra player fields here or add attributes
CompuCellSetup.initializeSimulationObjects(sim, simthread)
# Add Python steppables here
steppableRegistry = CompuCellSetup.getSteppableRegistry()
from helpfile_steppables_CellDraw import HelpfileCellDrawSteppable
theHelpfileCellDrawSteppable = HelpfileCellDrawSteppable(_simulator=sim,
_frequency=100)
steppableRegistry.registerSteppable(theHelpfileCellDrawSteppable)
# sfs=SimulationFileStorage(_simulator=sim,_frequency=10)
# sfs.addFileNameToStore("examples_PythonTutorial/cellsort_2D_info_printer/cellsort_2D.xml")
# sfs.addFileNameToStore("examples_PythonTutorial/cellsort_2D_info_printer/cellsort_2D_info_printer.py")
# sfs.addFileNameToStore("examples_PythonTutorial/cellsort_2D_info_printer/cellsort_2D_steppables_info_printer.py")
# steppableRegistry.registerSteppable(sfs)
CompuCellSetup.mainLoop(sim, simthread, steppableRegistry)
#PUT YOUR CODE HERE
#PUT YOUR CODE HERE
#PUT YOUR CODE HERE
import XMLUtils
steppableList=CompuCellSetup.cc3dXML2ObjConverter.root.getElements("Plugin")
steppableListPy=XMLUtils.CC3DXMLListPy(steppableList)
for element in steppableListPy:
print "Element",element.name
# ," name", element.getNumberOfChildren()
CompuCellSetup.initializeSimulationObjects(sim,simthread)
steppableRegistry=CompuCellSetup.getSteppableRegistry()
#Add Python steppables here
#PUT YOUR CODE HERE
#PUT YOUR CODE HERE
#PUT YOUR CODE HERE
# sim.ps.steppableCC3DXMLElementVector()
CompuCellSetup.mainLoop(sim,simthread,steppableRegistry)#main loop - simulation is invoked inside this function
import sys
from os import environ
from os import getcwd
import string
sys.path.append(environ["PYTHON_MODULE_PATH"])
import CompuCellSetup
sim, simthread = CompuCellSetup.getCoreSimulationObjects()
# add extra attributes here
pyAttributeDictionaryAdder, dictAdder = CompuCellSetup.attachDictionaryToCells(
sim)
CompuCellSetup.initializeSimulationObjects(sim, simthread)
# Definitions of additional Python-managed fields go here
#Add Python steppables here
steppableRegistry = CompuCellSetup.getSteppableRegistry()
from bistabSwitch2Steppables import EMT_switch1Steppable
steppableInstance = EMT_switch1Steppable(sim, _frequency=100)
steppableRegistry.registerSteppable(steppableInstance)
CompuCellSetup.mainLoop(sim, simthread, steppableRegistry)
import sys
from os import environ
from os import getcwd
import string
sys.path.append(environ["PYTHON_MODULE_PATH"])
import CompuCellSetup
sim,simthread = CompuCellSetup.getCoreSimulationObjects()
# add extra attributes here
pyAttributeDictionaryAdder,dictAdder=CompuCellSetup.attachDictionaryToCells(sim)
CompuCellSetup.initializeSimulationObjects(sim,simthread)
# Definitions of additional Python-managed fields go here
#Add Python steppables here
steppableRegistry=CompuCellSetup.getSteppableRegistry()
from bistabSwitch2Steppables import EMT_switch1Steppable
steppableInstance=EMT_switch1Steppable(sim,_frequency=100)
steppableRegistry.registerSteppable(steppableInstance)
CompuCellSetup.mainLoop(sim,simthread,steppableRegistry)
