def savefilefinger(self):
print "entered savefilefinger"
fName = QtGui.QFileDialog.getSaveFileName(self, "Save as xls file", "Save as new file", self.tr("Text Files (*.xls)"))
if fName.isEmpty() == False:
Expar.write_xls_2(str(fName),self, todo.Task.query.all(), todo.Tritemp.query.all())
print(fName)
print('is generated!')
QtGui.QMessageBox.about(self, "Saved", "%s is generated!" % (fName))
def savefilefinger(self):
print "entered savefilefinger"
fName = QtGui.QFileDialog.getSaveFileName(
self, "Save as xls file", "Save as new file",
self.tr("Text Files (*.xls)"))
if fName.isEmpty() == False:
Expar.write_xls_2(str(fName), self, todo.Task.query.all(),
todo.Tritemp.query.all())
print(fName)
print('is generated!')
QtGui.QMessageBox.about(self, "Saved",
"%s is generated!" % (fName))
def __init__(self, parent=None):
QtCore.QThread.__init__(self)
QtGui.QWidget.__init__(self, parent)
self.ui = Ui_Form()
self.ui.setupUi(self)
QtCore.QObject.connect(self.ui.pushButton, QtCore.SIGNAL("clicked()"), self.filebrower) #for input file
QtCore.QObject.connect(self.ui.pushButton_2, QtCore.SIGNAL("clicked()"), self.submit) #submit
QtCore.QObject.connect(self.ui.pushButton_3, QtCore.SIGNAL("clicked()"), self.reset) #reset
QtCore.QObject.connect(self.ui.pushButton_4, QtCore.SIGNAL("clicked()"), self.add_taxid1) #add taxid to include
QtCore.QObject.connect(self.ui.pushButton_5, QtCore.SIGNAL("clicked()"), self.add_taxid2) #add taxid to exclude
QtCore.QObject.connect(self.ui.pushButton_6, QtCore.SIGNAL("clicked()"), self.advance) #add taxid to exclude
self.ui.progressBar.hide()
self.ui.progressBar.setProperty("value", 0)
self.ui.lineEdit_add3 = QtGui.QLineEdit(self.ui.groupBox_2)
self.ui.lineEdit_add3.setGeometry(QtCore.QRect(70, 20, 281, 21))
self.ui.lineEdit_add3.setObjectName("lineEdit_3")
self.ui.lineEdit_add3.setText(QtGui.QApplication.translate("Form", "", None, QtGui.QApplication.UnicodeUTF8))
completer = QCompleter()
self.ui.lineEdit_add3.setCompleter(completer)
model = QStringListModel()
completer.setModel(model)
completer.setModelSorting(QCompleter.CaseInsensitivelySortedModel)
Expar.get_data(model)
self.ui.lineEdit_add2 = QtGui.QLineEdit(self.ui.groupBox_4)
self.ui.lineEdit_add2.setGeometry(QtCore.QRect(70, 19, 281, 21))
self.ui.lineEdit_add2.setObjectName("lineEdit_2")
self.ui.lineEdit_add2.setText(QtGui.QApplication.translate("Form", "", None, QtGui.QApplication.UnicodeUTF8))
completer = QCompleter()
self.ui.lineEdit_add2.setCompleter(completer)
model = QStringListModel()
completer.setModel(model)
completer.setModelSorting(QCompleter.CaseInsensitivelySortedModel)
Expar.get_data(model)
self.dbdir=os.path.join(os.path.expanduser("~"),".pyqtodo")
self.dbfile=os.path.join(self.dbdir,str(int(time.time()))+"tasks.sqlite")
if not os.path.isdir(self.dbdir):
os.mkdir(self.dbdir)
# Set up the Elixir internal thingamajigs
elixir.metadata.bind = "sqlite:///%s"%self.dbfile
elixir.setup_all()
if not os.path.exists(self.dbfile):
elixir.create_all()
global saveData
if elixir.__version__ < "0.6":
saveData=elixir.session.flush
else:
saveData=elixir.session.commit
saveData()
def savefilebrower_all(self):
print "entered savefilebrower_all"
fName = QtGui.QFileDialog.getSaveFileName(self, "Save as xls file", "Save as new file", self.tr("Text Files (*.xls)"))
#print "step5", globals()
if fName.isEmpty() == False:
Expar.write_xls(str(fName),self, todo.Task.query.all(), todo.Tritemp.query.all())
#t=file1+'simple.xls'
#rb = xlrd.open_workbook(t)
#wb = copy(rb)
#print(rb.sheet_by_index(0).cell(0,0).value)
#wb.save(fName)
print(fName)
print('is generated!')
QtGui.QMessageBox.about(self, "Saved", "%s is generated!" % (fName))
#SeqDep.delete_file('~') # delete all the files under this folder and begins with '~'
SeqDep.delete_file2()
self.close()
exit()
def submit(self):
input_filename=Expar.input_content(self.ui.textEdit.toPlainText(),self.ui.lineEdit.text())
if input_filename!='':
Expar.main_page(input_filename,self.ui.lineEdit_5.text(),self.ui.lineEdit_15.text(),self.ui.checkBox.isChecked(),self.ui.checkBox_2.isChecked(),self.ui.checkBox_3.isChecked(),int(self.ui.lineEdit_10.text()),int(self.ui.lineEdit_9.text()),int(self.ui.lineEdit_2.text()),int(self.ui.lineEdit_3.text()))
#Expar.main_page('HSV2.fasta','hsv2 (taxid:10310) OR hsv-1 (taxid:10298)','h**o (taxid:9605)',self.ui.checkBox.isChecked(),self.ui.checkBox_2.isChecked(),self.ui.checkBox_3.isChecked(),int(self.ui.lineEdit_10.text()),int(self.ui.lineEdit_9.text()),int(self.ui.lineEdit_2.text()),int(self.ui.lineEdit_3.text()))
self.dialog = QtGui.QDialog()
self.dialog.ui = Ui_Dialog()
self.dialog.ui.setupUi(self.dialog)
QtCore.QObject.connect(self.dialog.ui.pushButton, QtCore.SIGNAL("clicked()"), self.submit2) #submit
QtCore.QObject.connect(self.dialog.ui.pushButton_3, QtCore.SIGNAL("clicked()"), self.savefilefinger)
for finger in todo.Task.query.all():
item=QtGui.QTreeWidgetItem([str(finger.finger_id),str(finger.finger_type),str(finger.start),str(finger.length),str(finger.sequence),str(finger.exclude),str(finger.include)])
#print "exclude:",str(finger.exclude)
item.finger=finger
item.setCheckState(0,QtCore.Qt.Checked)
self.dialog.ui.list.sortByColumn(0, QtCore.Qt.AscendingOrder)
self.dialog.ui.list.addTopLevelItem(item)
self.dialog.ui.list.setSortingEnabled(True)
self.dialog.ui.list.setColumnWidth(4,250)
self.dialog.exec_()
def submit(self):
input_filename = Expar.input_content(self.ui.textEdit.toPlainText(),
self.ui.lineEdit.text())
if input_filename != '':
Expar.main_page(input_filename, self.ui.lineEdit_5.text(),
self.ui.lineEdit_15.text(),
self.ui.checkBox.isChecked(),
self.ui.checkBox_2.isChecked(),
self.ui.checkBox_3.isChecked(),
int(self.ui.lineEdit_10.text()),
int(self.ui.lineEdit_9.text()),
int(self.ui.lineEdit_2.text()),
int(self.ui.lineEdit_3.text()))
#Expar.main_page('HSV2.fasta','hsv2 (taxid:10310) OR hsv-1 (taxid:10298)','h**o (taxid:9605)',self.ui.checkBox.isChecked(),self.ui.checkBox_2.isChecked(),self.ui.checkBox_3.isChecked(),int(self.ui.lineEdit_10.text()),int(self.ui.lineEdit_9.text()),int(self.ui.lineEdit_2.text()),int(self.ui.lineEdit_3.text()))
self.dialog = QtGui.QDialog()
self.dialog.ui = Ui_Dialog()
self.dialog.ui.setupUi(self.dialog)
QtCore.QObject.connect(self.dialog.ui.pushButton,
QtCore.SIGNAL("clicked()"),
self.submit2) #submit
QtCore.QObject.connect(self.dialog.ui.pushButton_3,
QtCore.SIGNAL("clicked()"),
self.savefilefinger)
for finger in todo.Task.query.all():
item = QtGui.QTreeWidgetItem([
str(finger.finger_id),
str(finger.finger_type),
str(finger.start),
str(finger.length),
str(finger.sequence),
str(finger.exclude),
str(finger.include)
])
#print "exclude:",str(finger.exclude)
item.finger = finger
item.setCheckState(0, QtCore.Qt.Checked)
self.dialog.ui.list.sortByColumn(0, QtCore.Qt.AscendingOrder)
self.dialog.ui.list.addTopLevelItem(item)
self.dialog.ui.list.setSortingEnabled(True)
self.dialog.ui.list.setColumnWidth(4, 250)
self.dialog.exec_()
def savefilebrower_all(self):
print "entered savefilebrower_all"
fName = QtGui.QFileDialog.getSaveFileName(
self, "Save as xls file", "Save as new file",
self.tr("Text Files (*.xls)"))
#print "step5", globals()
if fName.isEmpty() == False:
Expar.write_xls(str(fName), self, todo.Task.query.all(),
todo.Tritemp.query.all())
#t=file1+'simple.xls'
#rb = xlrd.open_workbook(t)
#wb = copy(rb)
#print(rb.sheet_by_index(0).cell(0,0).value)
#wb.save(fName)
print(fName)
print('is generated!')
QtGui.QMessageBox.about(self, "Saved",
"%s is generated!" % (fName))
#SeqDep.delete_file('~') # delete all the files under this folder and begins with '~'
SeqDep.delete_file2()
self.close()
exit()
def __init__(self, parent=None):
QtCore.QThread.__init__(self)
QtGui.QWidget.__init__(self, parent)
self.ui = Ui_Form()
self.ui.setupUi(self)
QtCore.QObject.connect(self.ui.pushButton, QtCore.SIGNAL("clicked()"),
self.filebrower) #for input file
QtCore.QObject.connect(self.ui.pushButton_2,
QtCore.SIGNAL("clicked()"),
self.submit) #submit
QtCore.QObject.connect(self.ui.pushButton_3,
QtCore.SIGNAL("clicked()"), self.reset) #reset
QtCore.QObject.connect(self.ui.pushButton_4,
QtCore.SIGNAL("clicked()"),
self.add_taxid1) #add taxid to include
QtCore.QObject.connect(self.ui.pushButton_5,
QtCore.SIGNAL("clicked()"),
self.add_taxid2) #add taxid to exclude
QtCore.QObject.connect(self.ui.pushButton_6,
QtCore.SIGNAL("clicked()"),
self.advance) #add taxid to exclude
self.ui.progressBar.hide()
self.ui.progressBar.setProperty("value", 0)
self.ui.lineEdit_add3 = QtGui.QLineEdit(self.ui.groupBox_2)
self.ui.lineEdit_add3.setGeometry(QtCore.QRect(70, 20, 281, 21))
self.ui.lineEdit_add3.setObjectName("lineEdit_3")
self.ui.lineEdit_add3.setText(
QtGui.QApplication.translate("Form", "", None,
QtGui.QApplication.UnicodeUTF8))
completer = QCompleter()
self.ui.lineEdit_add3.setCompleter(completer)
model = QStringListModel()
completer.setModel(model)
completer.setModelSorting(QCompleter.CaseInsensitivelySortedModel)
Expar.get_data(model)
self.ui.lineEdit_add2 = QtGui.QLineEdit(self.ui.groupBox_4)
self.ui.lineEdit_add2.setGeometry(QtCore.QRect(70, 19, 281, 21))
self.ui.lineEdit_add2.setObjectName("lineEdit_2")
self.ui.lineEdit_add2.setText(
QtGui.QApplication.translate("Form", "", None,
QtGui.QApplication.UnicodeUTF8))
completer = QCompleter()
self.ui.lineEdit_add2.setCompleter(completer)
model = QStringListModel()
completer.setModel(model)
completer.setModelSorting(QCompleter.CaseInsensitivelySortedModel)
Expar.get_data(model)
self.dbdir = os.path.join(os.path.expanduser("~"), ".pyqtodo")
self.dbfile = os.path.join(self.dbdir,
str(int(time.time())) + "tasks.sqlite")
if not os.path.isdir(self.dbdir):
os.mkdir(self.dbdir)
# Set up the Elixir internal thingamajigs
elixir.metadata.bind = "sqlite:///%s" % self.dbfile
elixir.setup_all()
if not os.path.exists(self.dbfile):
elixir.create_all()
global saveData
if elixir.__version__ < "0.6":
saveData = elixir.session.flush
else:
saveData = elixir.session.commit
saveData()
