def test_runDeterministicSimulationOnExtendedModel(self): Test_CreateSimpleModel.extendModel(self.datamodel) task=runDeterministicSimulation(self.datamodel) self.assert_(task!=None) self.assert_(task.__class__==COPASI.CTrajectoryTask) timeseries=task.getTimeSeries() self.assert_(timeseries!=None) self.assert_(timeseries.__class__==COPASI.CTimeSeries) self.assert_(timeseries.getRecordedSteps()==10001) self.assert_(timeseries.getNumVariables()==5) value=timeseries.getConcentrationData(3574,0) self.assert_(math.fabs((value-3.574)/3.574)<0.001) value=timeseries.getConcentrationData(3574,1) value2=timeseries.getConcentrationData(3574,3) self.assert_(math.fabs((value-value2)/value)<0.001)
def test_runHybridSimulationOnExtendedModel(self):
Test_CreateSimpleModel.extendModel(self.datamodel)
values=[]
for x in range(0,self.NUM_REPEATS):
task=runHybridSimulation(self.datamodel)
self.assert_(task!=None)
self.assert_(task.__class__==COPASI.CTrajectoryTask)
timeseries=task.getTimeSeries()
self.assert_(timeseries!=None)
self.assert_(timeseries.__class__==COPASI.CTimeSeries)
self.assert_(timeseries.getRecordedSteps()==10001)
self.assert_(timeseries.getNumVariables()==5)
values.append([timeseries.getConcentrationData(3574,0),timeseries.getConcentrationData(3574,1),timeseries.getConcentrationData(3574,3)])
average=[0.0,0.0,0.0]
for x in range(0,len(values)):
average[0]+=values[x][0]
average[1]+=values[x][1]
average[2]+=values[x][2]
average[0]=average[0]/len(values)
average[1]=average[1]/len(values)
average[2]=average[2]/len(values)
self.assert_(math.fabs((average[0]-3.574)/3.574)<0.001)
self.assert_(math.fabs((average[1]-average[2])/average[1])<0.01)
Test_CReportDefinition.suite(),
Test_CReportDefinitionVector.suite(),
Test_CReaction.suite(),
Test_CModel.suite(),
Test_CCopasiProblem.suite(),
Test_CCopasiMethod.suite(),
Test_CCopasiTask.suite(),
Test_CTrajectoryProblem.suite(),
Test_CTrajectoryMethod.suite(),
Test_CTrajectoryTask.suite(),
Test_CCopasiDataModel.suite(),
Test_CFunctionDB.suite(),
Test_CEvaluationTree.suite(),
Test_CFunction.suite(),
Test_CFunctionParameters.suite(),
Test_CFunctionParameter.suite(),
Test_CReport.suite(),
Test_CEvent.suite(),
Test_COutputAssistant.suite(),
Test_CreateSimpleModel.suite(),
Test_RunSimulations.suite(),
]
def suite():
return unittest.TestSuite(suites)
if __name__ == "__main__":
unittest.TextTestRunner(verbosity=2).run(suite())
,Test_CReportDefinition.suite()
,Test_CReportDefinitionVector.suite()
,Test_CReaction.suite()
,Test_CModel.suite()
,Test_CCopasiProblem.suite()
,Test_CCopasiMethod.suite()
,Test_CCopasiTask.suite()
,Test_CTrajectoryProblem.suite()
,Test_CTrajectoryMethod.suite()
,Test_CTrajectoryTask.suite()
,Test_CCopasiDataModel.suite()
,Test_CFunctionDB.suite()
,Test_CEvaluationTree.suite()
,Test_CFunction.suite()
,Test_CFunctionParameters.suite()
,Test_CFunctionParameter.suite()
,Test_CReport.suite()
,Test_CEvent.suite()
,Test_COutputAssistant.suite()
,Test_CreateSimpleModel.suite()
,Test_RunSimulations.suite()
]
def suite():
return unittest.TestSuite(suites)
if(__name__ == '__main__'):
unittest.TextTestRunner(verbosity=2).run(suite())
def test_runParameterFittingOnExtendedModel(self):
Test_CreateSimpleModel.extendModel(self.model)
def setUp(self):
self.model = Test_CreateSimpleModel.createModel()
def setUp(self): self.datamodel=Test_CreateSimpleModel.createModel() self.model=self.datamodel.getModel() self.NUM_REPEATS=20
def test_runParameterFittingOnExtendedModel(self):
Test_CreateSimpleModel.extendModel(self.model)
def setUp(self): self.model=Test_CreateSimpleModel.createModel()
