def __init__(self, master):
"""Initialize the attributes and set up the interface"""
QDialog.__init__(self, master, windowTitle=self.captionTitle)
WidgetMessagesMixin.__init__(self)
self.setLayout(QVBoxLayout())
self.insert_message_bar()
self.layout().insertWidget(0, self.message_bar)
self.master = master
self.keep_running = False
self.scheduled_call = None
self.saved_state = None
self.saved_progress = 0
self.scores = []
self.add_to_model = queue.Queue()
self.update_timer = QTimer(self)
self.update_timer.timeout.connect(self._update)
self.update_timer.setInterval(200)
self._thread = None
self._worker = None
self.filter = QLineEdit()
self.filter.setPlaceholderText("Filter ...")
self.filter.textChanged.connect(self.filter_changed)
self.layout().addWidget(self.filter)
# Remove focus from line edit
self.setFocus(Qt.ActiveWindowFocusReason)
self.rank_model = QStandardItemModel(self)
self.model_proxy = QSortFilterProxyModel(self,
filterCaseSensitivity=False)
self.model_proxy.setSourceModel(self.rank_model)
self.rank_table = view = QTableView(
selectionBehavior=QTableView.SelectRows,
selectionMode=QTableView.SingleSelection,
showGrid=False,
editTriggers=gui.TableView.NoEditTriggers)
if self._has_bars:
view.setItemDelegate(TableBarItem())
else:
view.setItemDelegate(HorizontalGridDelegate())
view.setModel(self.model_proxy)
view.selectionModel().selectionChanged.connect(
self.on_selection_changed)
view.horizontalHeader().setStretchLastSection(True)
view.horizontalHeader().hide()
self.layout().addWidget(view)
self.button = gui.button(self,
self,
"Start",
callback=self.toggle,
default=True)
def __init__(self, parent=None, **kwargs):
super(AddonManagerWidget, self).__init__(parent, **kwargs)
#: list of Available | Installed
self.__items = []
self.setLayout(QVBoxLayout())
self.__header = QLabel(
wordWrap=True,
textFormat=Qt.RichText
)
self.__search = QLineEdit(
placeholderText=self.tr("Filter")
)
self.layout().addWidget(self.__search)
self.__view = view = QTreeView(
rootIsDecorated=False,
editTriggers=QTreeView.NoEditTriggers,
selectionMode=QTreeView.SingleSelection,
alternatingRowColors=True
)
self.__view.setItemDelegateForColumn(0, TristateCheckItemDelegate())
self.layout().addWidget(view)
self.__model = model = QStandardItemModel()
model.setHorizontalHeaderLabels(["", "Name", "Version", "Action"])
model.dataChanged.connect(self.__data_changed)
proxy = QSortFilterProxyModel(
filterKeyColumn=1,
filterCaseSensitivity=Qt.CaseInsensitive
)
proxy.setSourceModel(model)
self.__search.textChanged.connect(proxy.setFilterFixedString)
view.setModel(proxy)
view.selectionModel().selectionChanged.connect(
self.__update_details
)
header = self.__view.header()
header.setSectionResizeMode(0, QHeaderView.Fixed)
header.setSectionResizeMode(2, QHeaderView.ResizeToContents)
self.__details = QTextBrowser(
frameShape=QTextBrowser.NoFrame,
readOnly=True,
lineWrapMode=QTextBrowser.WidgetWidth,
openExternalLinks=True,
)
self.__details.setWordWrapMode(QTextOption.WordWrap)
palette = QPalette(self.palette())
palette.setColor(QPalette.Base, Qt.transparent)
self.__details.setPalette(palette)
self.layout().addWidget(self.__details)
def __init__(self):
super().__init__()
self.data: Optional[Table] = None
self.reference: Optional[Table] = None
self.filter_edit = QLineEdit(textChanged=self.__filter_edit_changed,
placeholderText="Filter...")
self.view = QTableView(sortingEnabled=True,
contextMenuPolicy=Qt.CustomContextMenu,
selectionMode=QTableView.NoSelection)
self.view.customContextMenuRequested.connect(self.__menu_requested)
self.view.setItemDelegateForColumn(self.Header.variable,
VariableDelegate(self))
self.view.verticalHeader().hide()
self.view.horizontalHeader().setStretchLastSection(True)
self.view.horizontalHeader().setMaximumSectionSize(350)
self.model = VariableItemModel(self)
self.model.setHorizontalHeaderLabels([x for _, x in self.HEADER])
self.model.dataChanged.connect(self.__table_data_changed)
self.model.dataHasNanColumn.connect(self.Information.nans_removed)
self.proxy_model = QSortFilterProxyModel()
self.proxy_model.setFilterKeyColumn(-1)
self.proxy_model.setFilterCaseSensitivity(False)
self.proxy_model.setSourceModel(self.model)
self.view.setModel(self.proxy_model)
vbox = gui.vBox(self.controlArea, box=True)
vbox.layout().addWidget(self.filter_edit)
vbox.layout().addWidget(self.view)
box = gui.hBox(vbox)
gui.rubber(box)
for name in self.ACTIONS:
gui.button(box,
self,
name.capitalize(),
lambda *args, fun=name: self._initialize_values(fun),
autoDefault=False)
gui.rubber(box)
box = gui.auto_apply(self.controlArea, self, "auto_commit")
box.button.setFixedWidth(180)
box.layout().insertStretch(0)
# pylint: disable=unnecessary-lambda
append = gui.checkBox(None,
self,
"append_to_data",
"Append this instance to input data",
callback=lambda: self.commit())
box.layout().insertWidget(0, append)
self._set_input_summary()
self._set_output_summary()
self.settingsAboutToBePacked.connect(self.pack_settings)
def __init__(self):
super().__init__()
self.data: Optional[Table] = None
self.reference: Optional[Table] = None
self.filter_edit = QLineEdit(textChanged=self.__filter_edit_changed,
placeholderText="筛选...")
self.view = QTableView(sortingEnabled=True,
contextMenuPolicy=Qt.CustomContextMenu,
selectionMode=QTableView.NoSelection)
self.view.customContextMenuRequested.connect(self.__menu_requested)
self.view.setItemDelegateForColumn(self.Header.variable,
VariableDelegate(self))
self.view.verticalHeader().hide()
self.view.horizontalHeader().setStretchLastSection(True)
self.view.horizontalHeader().setMaximumSectionSize(350)
self.model = VariableItemModel(self)
self.model.setHorizontalHeaderLabels([x for _, x in self.HEADER])
self.model.dataChanged.connect(self.__table_data_changed)
self.model.dataHasNanColumn.connect(self.Information.nans_removed)
self.proxy_model = QSortFilterProxyModel()
self.proxy_model.setFilterKeyColumn(-1)
self.proxy_model.setFilterCaseSensitivity(Qt.CaseInsensitive)
self.proxy_model.setSourceModel(self.model)
self.view.setModel(self.proxy_model)
vbox = gui.vBox(self.controlArea, box=True)
vbox.layout().addWidget(self.filter_edit)
vbox.layout().addWidget(self.view)
box = gui.hBox(vbox, objectName="buttonBox")
gui.rubber(box)
for action, name in zip(self.ACTIONS, self.ACTIONS_NAME):
gui.button(box,
self,
name.capitalize(),
lambda *args, fun=action: self._initialize_values(fun),
autoDefault=False)
gui.rubber(box)
gui.checkBox(self.buttonsArea,
self,
"append_to_data",
"将此实例追加到输入数据",
callback=self.commit.deferred)
gui.rubber(self.buttonsArea)
gui.auto_apply(self.buttonsArea, self, "auto_commit")
self.settingsAboutToBePacked.connect(self.pack_settings)
def __init__(self, *a, preferred_size=None, **ak):
super().__init__(*a, **ak)
self.__search = QLineEdit(self, placeholderText="Filter...")
self.__search.textEdited.connect(self.__setFilterString)
# Use an QSortFilterProxyModel for filtering. Note that this is
# never set on the view, only its rows insertes/removed signals are
# connected to observe an update row hidden state.
self.__pmodel = QSortFilterProxyModel(
self, filterCaseSensitivity=Qt.CaseInsensitive)
self.__pmodel.rowsAboutToBeRemoved.connect(
self.__filter_rowsAboutToBeRemoved)
self.__pmodel.rowsInserted.connect(self.__filter_rowsInserted)
self.__layout()
self.preferred_size = preferred_size
self.setMinimumHeight(100)
def __init__(self):
self.data = None
self.classifier = None
self.selected = None
self.model = CustomRuleViewerTableModel(parent=self)
self.model.set_horizontal_header_labels(
[
"IF conditions",
"",
"THEN class",
"Distribution",
"Probabilities [%]",
"Quality",
"Length",
]
)
self.proxy_model = QSortFilterProxyModel(parent=self)
self.proxy_model.setSourceModel(self.model)
self.proxy_model.setSortRole(self.model.SortRole)
self.view = gui.TableView(self, wordWrap=False)
self.view.setModel(self.proxy_model)
self.view.verticalHeader().setVisible(True)
self.view.horizontalHeader().setStretchLastSection(False)
self.view.selectionModel().selectionChanged.connect(self.commit)
self.dist_item_delegate = DistributionItemDelegate(self)
self.view.setItemDelegateForColumn(3, self.dist_item_delegate)
self.mainArea.layout().setContentsMargins(0, 0, 0, 0)
self.mainArea.layout().addWidget(self.view)
bottom_box = gui.hBox(widget=self.mainArea, box=None, margin=0, spacing=0)
original_order_button = QPushButton("Restore original order", autoDefault=False)
original_order_button.setFixedWidth(180)
bottom_box.layout().addWidget(original_order_button)
original_order_button.clicked.connect(self.restore_original_order)
gui.separator(bottom_box, width=5, height=0)
gui.checkBox(
widget=bottom_box,
master=self,
value="compact_view",
label="Compact view",
callback=self.on_update,
)
def __init__(self):
super().__init__()
self.data = None
self.classifier = None
self.selected = None
self.info.set_input_summary(self.info.NoInput)
self.info.set_output_summary(self.info.NoOutput)
self.model = CustomRuleViewerTableModel(parent=self)
self.model.set_horizontal_header_labels([
"IF conditions", "", "THEN class", "Distribution",
"Probabilities [%]", "Quality", "Length"
])
self.proxy_model = QSortFilterProxyModel(parent=self)
self.proxy_model.setSourceModel(self.model)
self.proxy_model.setSortRole(self.model.SortRole)
self.view = gui.TableView(self, wordWrap=False)
self.view.setModel(self.proxy_model)
self.view.verticalHeader().setVisible(True)
self.view.horizontalHeader().setStretchLastSection(False)
self.view.selectionModel().selectionChanged.connect(self.commit)
self.dist_item_delegate = DistributionItemDelegate(self)
self.view.setItemDelegateForColumn(3, self.dist_item_delegate)
self.controlArea.layout().addWidget(self.view)
gui.checkBox(widget=self.buttonsArea,
master=self,
value="compact_view",
label="Compact view",
callback=self.on_update)
gui.rubber(self.buttonsArea)
original_order_button = gui.button(
self.buttonsArea,
self,
"Restore original order",
autoDefault=False,
callback=self.restore_original_order,
attribute=Qt.WA_LayoutUsesWidgetRect,
)
original_order_button.clicked.connect(self.restore_original_order)
def __init__(self):
super().__init__()
self.data = None
self.classifier = None
self.selected = None
self.model = CustomRuleViewerTableModel(parent=self)
self.model.set_horizontal_header_labels(
["如果条件", "", "然后类别", "分布", "概率 [%]", "质量", "长度"])
self.proxy_model = QSortFilterProxyModel(parent=self)
self.proxy_model.setSourceModel(self.model)
self.proxy_model.setSortRole(self.model.SortRole)
self.view = gui.TableView(self, wordWrap=False)
self.view.setModel(self.proxy_model)
self.view.verticalHeader().setVisible(True)
self.view.horizontalHeader().setStretchLastSection(False)
self.view.selectionModel().selectionChanged.connect(self.commit)
self.dist_item_delegate = DistributionItemDelegate(self)
self.view.setItemDelegateForColumn(3, self.dist_item_delegate)
self.controlArea.layout().addWidget(self.view)
gui.checkBox(
widget=self.buttonsArea,
master=self,
value="compact_view",
label="紧凑型视图",
callback=self.on_update,
)
gui.rubber(self.buttonsArea)
original_order_button = gui.button(
self.buttonsArea,
self,
"恢复原始顺序",
autoDefault=False,
callback=self.restore_original_order,
attribute=Qt.WA_LayoutUsesWidgetRect,
)
original_order_button.clicked.connect(self.restore_original_order)
def setup_gui(self):
# control area
info_box = vBox(self.controlArea, 'Input info')
self.input_info = widgetLabel(info_box)
hierarchy_box = widgetBox(self.controlArea, "Entity Sets")
self.hierarchy_widget = QTreeWidget(self)
self.hierarchy_widget.setEditTriggers(QTreeView.NoEditTriggers)
self.hierarchy_widget.setHeaderLabels(HIERARCHY_HEADER_LABELS)
self.hierarchy_widget.itemClicked.connect(self.display_gene_sets)
hierarchy_box.layout().addWidget(self.hierarchy_widget)
self.commit_button = auto_commit(self.controlArea,
self,
"auto_commit",
"&Commit",
box=False)
# rubber(self.controlArea)
# main area
self.filter_proxy_model = QSortFilterProxyModel(self.data_view)
self.filter_proxy_model.setFilterKeyColumn(3)
self.data_view = QTreeView()
self.data_view.setModel(self.filter_proxy_model)
self.data_view.setAlternatingRowColors(True)
self.data_view.sortByColumn(2, Qt.DescendingOrder)
self.data_view.setSortingEnabled(True)
self.data_view.setSelectionMode(QTreeView.ExtendedSelection)
self.data_view.setEditTriggers(QTreeView.NoEditTriggers)
self.data_view.viewport().setMouseTracking(True)
self.data_view.setItemDelegateForColumn(
TERM, LinkStyledItemDelegate(self.data_view))
self.data_view.selectionModel().selectionChanged.connect(self.commit)
self.lineEdit_filter = lineEdit(self.mainArea, self, 'search_pattern',
'Filter gene sets:')
self.lineEdit_filter.setPlaceholderText('search pattern ...')
self.lineEdit_filter.textChanged.connect(
self.filter_proxy_model.setFilterRegExp)
self.mainArea.layout().addWidget(self.data_view)
def _onItemsCompleted(self):
self.setBlocking(False)
self.progressBarFinished()
self.setEnabled(True)
try:
schema, geneinfo = self.itemsfuture.result()
finally:
self.itemsfuture = None
self.geneinfo = geneinfo = list(zip(self.genes, geneinfo))
self.cells = cells = []
self.row2geneinfo = {}
links = []
for i, (_, gi) in enumerate(geneinfo):
if gi:
row = []
for _, item in zip(schema, gi):
if isinstance(item, Link):
# TODO: This should be handled by delegates
row.append(item.text)
links.append(item.link)
else:
row.append(item)
cells.append(row)
self.row2geneinfo[len(cells) - 1] = i
model = TreeModel(cells, [str(col) for col in schema], None)
model.setColumnLinks(0, links)
proxyModel = QSortFilterProxyModel(self)
proxyModel.setSourceModel(model)
self.treeWidget.setModel(proxyModel)
self.treeWidget.selectionModel().selectionChanged.connect(self.commit)
for i in range(7):
self.treeWidget.resizeColumnToContents(i)
self.treeWidget.setColumnWidth(
i, min(self.treeWidget.columnWidth(i), 200))
self.infoLabel.setText("%i genes\n%i matched NCBI's IDs" %
(len(self.genes), len(cells)))
self.matchedInfo = len(self.genes), len(cells)
def _create_layout(self):
self._new_webview()
box = gui.widgetBox(self.controlArea, 'Info')
self.topic_info = gui.label(box, self,
'%(n_topic_words)d words in a topic')
gui.label(box, self, '%(documents_info_str)s')
box = gui.widgetBox(self.controlArea, 'Cloud preferences')
gui.checkBox(box,
self,
'words_color',
'Color words',
callback=self.on_cloud_pref_change)
TILT_VALUES = ('no', '30°', '45°', '60°')
gui.valueSlider(box,
self,
'words_tilt',
label='Words tilt:',
values=list(range(len(TILT_VALUES))),
callback=self.on_cloud_pref_change,
labelFormat=lambda x: TILT_VALUES[x])
gui.button(box,
None,
'Regenerate word cloud',
callback=self.on_cloud_pref_change)
box = gui.widgetBox(self.controlArea, 'Words && weights')
class TableView(gui.TableView):
def __init__(self, parent):
super().__init__(parent)
self._parent = parent
self.__nope = False
def setModel(self, model):
"""Otherwise QTableView.setModel() calls
QAbstractItemView.setSelectionModel() which resets selection,
calling selectionChanged() and overwriting any selected_words
setting that may have been saved."""
self.__nope = True
super().setModel(model)
self.__nope = False
def selectionChanged(self, selected, deselected):
nonlocal model, proxymodel
super().selectionChanged(selected, deselected)
if not self.__nope:
words = {
model[proxymodel.mapToSource(index).row()][1]
for index in self.selectionModel().selectedIndexes()
}
self._parent.update_selection(words, self)
def update_selection(self, words):
nonlocal model, proxymodel
selection = QItemSelection()
for i, (_, word) in enumerate(model):
if word in words:
index = proxymodel.mapFromSource(model.index(i, 1))
selection.select(index, index)
self.__nope = True
self.clearSelection()
self.selectionModel().select(
selection,
QItemSelectionModel.Select | QItemSelectionModel.Rows)
self.__nope = False
view = self.tableview = TableView(self)
model = self.tablemodel = PyTableModel(parent=self)
proxymodel = QSortFilterProxyModel(
self,
dynamicSortFilter=True,
sortCaseSensitivity=Qt.CaseInsensitive,
sortRole=Qt.EditRole)
proxymodel.setSourceModel(model)
model.setHorizontalHeaderLabels(['Weight', 'Word'])
view.setModel(proxymodel)
box.layout().addWidget(view)
def showPopup(self):
# type: () -> None
"""
Reimplemented from QComboBox.showPopup
Popup up a customized view and filter edit line.
Note
----
The .popup(), .lineEdit(), .completer() of the base class are not used.
"""
if self.__popup is not None:
# We have user entered state that cannot be disturbed
# (entered filter text, scroll offset, ...)
return # pragma: no cover
if self.count() == 0:
return
opt = QStyleOptionComboBox()
self.initStyleOption(opt)
popup = QListView(
uniformItemSizes=True,
horizontalScrollBarPolicy=Qt.ScrollBarAlwaysOff,
verticalScrollBarPolicy=Qt.ScrollBarAsNeeded,
iconSize=self.iconSize(),
)
popup.setFocusProxy(self.__searchline)
popup.setParent(self, Qt.Popup | Qt.FramelessWindowHint)
popup.setItemDelegate(_ComboBoxListDelegate(popup))
proxy = QSortFilterProxyModel(
popup, filterCaseSensitivity=Qt.CaseInsensitive
)
proxy.setFilterKeyColumn(self.modelColumn())
proxy.setSourceModel(self.model())
popup.setModel(proxy)
root = proxy.mapFromSource(self.rootModelIndex())
popup.setRootIndex(root)
self.__popup = popup
self.__proxy = proxy
self.__searchline.setText("")
self.__searchline.setPlaceholderText("Filter...")
self.__searchline.setVisible(True)
self.__searchline.textEdited.connect(proxy.setFilterFixedString)
style = self.style() # type: QStyle
popuprect_origin = style.subControlRect(
QStyle.CC_ComboBox, opt, QStyle.SC_ComboBoxListBoxPopup, self
) # type: QRect
popuprect_origin = QRect(
self.mapToGlobal(popuprect_origin.topLeft()),
popuprect_origin.size()
)
editrect = style.subControlRect(
QStyle.CC_ComboBox, opt, QStyle.SC_ComboBoxEditField, self
) # type: QRect
self.__searchline.setGeometry(editrect)
desktop = QApplication.desktop()
screenrect = desktop.availableGeometry(self) # type: QRect
# get the height for the view
listrect = QRect()
for i in range(min(proxy.rowCount(root), self.maxVisibleItems())):
index = proxy.index(i, self.modelColumn(), root)
if index.isValid():
listrect = listrect.united(popup.visualRect(index))
if listrect.height() >= screenrect.height():
break
window = popup.window() # type: QWidget
window.ensurePolished()
if window.layout() is not None:
window.layout().activate()
else:
QApplication.sendEvent(window, QEvent(QEvent.LayoutRequest))
margins = qwidget_margin_within(popup.viewport(), window)
height = (listrect.height() + 2 * popup.spacing() +
margins.top() + margins.bottom())
popup_size = (QSize(popuprect_origin.width(), height)
.expandedTo(window.minimumSize())
.boundedTo(window.maximumSize())
.boundedTo(screenrect.size()))
popuprect = QRect(popuprect_origin.bottomLeft(), popup_size)
popuprect = dropdown_popup_geometry(
popuprect, popuprect_origin, screenrect)
popup.setGeometry(popuprect)
current = proxy.mapFromSource(
self.model().index(self.currentIndex(), self.modelColumn(),
self.rootModelIndex()))
popup.setCurrentIndex(current)
popup.scrollTo(current, QAbstractItemView.EnsureVisible)
popup.show()
popup.setFocus(Qt.PopupFocusReason)
popup.installEventFilter(self)
popup.viewport().installEventFilter(self)
popup.viewport().setMouseTracking(True)
self.update()
self.__popupTimer.restart()
def __init__(self):
super().__init__()
self.local_cache_path = os.path.join(data_dir(), self.DATASET_DIR)
self.__awaiting_state = None # type: Optional[_FetchState]
box = gui.widgetBox(self.controlArea, "Info")
self.infolabel = QLabel(text="Initializing...\n\n")
box.layout().addWidget(self.infolabel)
gui.widgetLabel(self.mainArea, "Filter")
self.filterLineEdit = QLineEdit(
textChanged=self.filter
)
self.mainArea.layout().addWidget(self.filterLineEdit)
self.splitter = QSplitter(orientation=Qt.Vertical)
self.view = QTreeView(
sortingEnabled=True,
selectionMode=QTreeView.SingleSelection,
alternatingRowColors=True,
rootIsDecorated=False,
editTriggers=QTreeView.NoEditTriggers,
)
box = gui.widgetBox(self.splitter, "Description", addToLayout=False)
self.descriptionlabel = QLabel(
wordWrap=True,
textFormat=Qt.RichText,
)
self.descriptionlabel = QTextBrowser(
openExternalLinks=True,
textInteractionFlags=(Qt.TextSelectableByMouse |
Qt.LinksAccessibleByMouse)
)
self.descriptionlabel.setFrameStyle(QTextBrowser.NoFrame)
# no (white) text background
self.descriptionlabel.viewport().setAutoFillBackground(False)
box.layout().addWidget(self.descriptionlabel)
self.splitter.addWidget(self.view)
self.splitter.addWidget(box)
self.splitter.setSizes([300, 200])
self.splitter.splitterMoved.connect(
lambda:
setattr(self, "splitter_state", bytes(self.splitter.saveState()))
)
self.mainArea.layout().addWidget(self.splitter)
self.controlArea.layout().addStretch(10)
gui.auto_commit(self.controlArea, self, "auto_commit", "Send Data")
model = QStandardItemModel(self)
model.setHorizontalHeaderLabels(HEADER)
proxy = QSortFilterProxyModel()
proxy.setSourceModel(model)
proxy.setFilterKeyColumn(-1)
proxy.setFilterCaseSensitivity(False)
self.view.setModel(proxy)
if self.splitter_state:
self.splitter.restoreState(self.splitter_state)
self.view.setItemDelegateForColumn(
Header.Size, SizeDelegate(self))
self.view.setItemDelegateForColumn(
Header.Local, gui.IndicatorItemDelegate(self, role=Qt.DisplayRole))
self.view.setItemDelegateForColumn(
Header.Instances, NumericalDelegate(self))
self.view.setItemDelegateForColumn(
Header.Variables, NumericalDelegate(self))
self.view.resizeColumnToContents(Header.Local)
if self.header_state:
self.view.header().restoreState(self.header_state)
self.setBlocking(True)
self.setStatusMessage("Initializing")
self._executor = ThreadPoolExecutor(max_workers=1)
f = self._executor.submit(self.list_remote)
w = FutureWatcher(f, parent=self)
w.done.connect(self.__set_index)
def __init__(self):
super().__init__()
self.allinfo_local = {}
self.allinfo_remote = {}
self.local_cache_path = os.path.join(data_dir(), self.DATASET_DIR)
# current_output does not equal selected_id when, for instance, the
# data is still downloading
self.current_output = None
self._header_labels = [
header['label'] for _, header in self.HEADER_SCHEMA]
self._header_index = namedtuple(
'_header_index', [info_tag for info_tag, _ in self.HEADER_SCHEMA])
self.Header = self._header_index(
*[index for index, _ in enumerate(self._header_labels)])
self.__awaiting_state = None # type: Optional[_FetchState]
self.filterLineEdit = QLineEdit(
textChanged=self.filter, placeholderText="Search for data set ..."
)
self.mainArea.layout().addWidget(self.filterLineEdit)
self.splitter = QSplitter(orientation=Qt.Vertical)
self.view = TreeViewWithReturn(
sortingEnabled=True,
selectionMode=QTreeView.SingleSelection,
alternatingRowColors=True,
rootIsDecorated=False,
editTriggers=QTreeView.NoEditTriggers,
uniformRowHeights=True,
toolTip="Press Return or double-click to send"
)
# the method doesn't exists yet, pylint: disable=unnecessary-lambda
self.view.doubleClicked.connect(self.commit)
self.view.returnPressed.connect(self.commit)
box = gui.widgetBox(self.splitter, "说明", addToLayout=False)
self.descriptionlabel = QLabel(
wordWrap=True,
textFormat=Qt.RichText,
)
self.descriptionlabel = QTextBrowser(
openExternalLinks=True,
textInteractionFlags=(Qt.TextSelectableByMouse |
Qt.LinksAccessibleByMouse)
)
self.descriptionlabel.setFrameStyle(QTextBrowser.NoFrame)
# no (white) text background
self.descriptionlabel.viewport().setAutoFillBackground(False)
box.layout().addWidget(self.descriptionlabel)
self.splitter.addWidget(self.view)
self.splitter.addWidget(box)
self.splitter.setSizes([300, 200])
self.splitter.splitterMoved.connect(
lambda:
setattr(self, "splitter_state", bytes(self.splitter.saveState()))
)
self.mainArea.layout().addWidget(self.splitter)
proxy = QSortFilterProxyModel()
proxy.setFilterKeyColumn(-1)
proxy.setFilterCaseSensitivity(False)
self.view.setModel(proxy)
if self.splitter_state:
self.splitter.restoreState(self.splitter_state)
self.assign_delegates()
self.setBlocking(True)
self.setStatusMessage("Initializing")
self._executor = ThreadPoolExecutor(max_workers=1)
f = self._executor.submit(self.list_remote)
w = FutureWatcher(f, parent=self)
w.done.connect(self.__set_index)
def __init__(self, parent):
QFrame.__init__(self, parent)
self.setContentsMargins(0, 0, 0, 0)
layout = QVBoxLayout()
layout.setContentsMargins(0, 0, 0, 0)
layout.setSpacing(1)
self._setNameLineEdit = QLineEdit(self)
layout.addWidget(self._setNameLineEdit)
self._setListView = QListView(self)
self._listModel = QStandardItemModel(self)
self._proxyModel = QSortFilterProxyModel(self)
self._proxyModel.setSourceModel(self._listModel)
self._setListView.setModel(self._proxyModel)
self._setListView.setItemDelegate(ListItemDelegate(self))
self._setNameLineEdit.textChanged.connect(
self._proxyModel.setFilterFixedString)
self._completer = QCompleter(self._listModel, self)
self._setNameLineEdit.setCompleter(self._completer)
self._listModel.itemChanged.connect(self._onSetNameChange)
layout.addWidget(self._setListView)
buttonLayout = QHBoxLayout()
self._addAction = QAction("+", self, toolTip="Add a new sort key")
self._updateAction = QAction("Update",
self,
toolTip="Update/save current selection")
self._removeAction = QAction("\u2212",
self,
toolTip="Remove selected sort key.")
self._addToolButton = QToolButton(self)
self._updateToolButton = QToolButton(self)
self._removeToolButton = QToolButton(self)
self._updateToolButton.setSizePolicy(QSizePolicy.MinimumExpanding,
QSizePolicy.Minimum)
self._addToolButton.setDefaultAction(self._addAction)
self._updateToolButton.setDefaultAction(self._updateAction)
self._removeToolButton.setDefaultAction(self._removeAction)
buttonLayout.addWidget(self._addToolButton)
buttonLayout.addWidget(self._updateToolButton)
buttonLayout.addWidget(self._removeToolButton)
layout.addLayout(buttonLayout)
self.setLayout(layout)
self._addAction.triggered.connect(self.addCurrentSelection)
self._updateAction.triggered.connect(self.updateSelectedSelection)
self._removeAction.triggered.connect(self.removeSelectedSelection)
self._setListView.selectionModel().selectionChanged.connect(
self._onListViewSelectionChanged)
self.selectionModel = None
self._selections = []
def __init__(self):
super().__init__()
self.local_cache_path = os.path.join(data_dir(), self.DATASET_DIR)
self._header_labels = [header['label'] for _, header in self.HEADER_SCHEMA]
self._header_index = namedtuple('_header_index', [info_tag for info_tag, _ in self.HEADER_SCHEMA])
self.Header = self._header_index(*[index for index, _ in enumerate(self._header_labels)])
self.__awaiting_state = None # type: Optional[_FetchState]
box = gui.widgetBox(self.controlArea, "Info")
self.infolabel = QLabel(text="Initializing...\n\n")
box.layout().addWidget(self.infolabel)
gui.widgetLabel(self.mainArea, "Filter")
self.filterLineEdit = QLineEdit(
textChanged=self.filter
)
self.mainArea.layout().addWidget(self.filterLineEdit)
self.splitter = QSplitter(orientation=Qt.Vertical)
self.view = QTreeView(
sortingEnabled=True,
selectionMode=QTreeView.SingleSelection,
alternatingRowColors=True,
rootIsDecorated=False,
editTriggers=QTreeView.NoEditTriggers,
uniformRowHeights=True,
)
box = gui.widgetBox(self.splitter, "Description", addToLayout=False)
self.descriptionlabel = QLabel(
wordWrap=True,
textFormat=Qt.RichText,
)
self.descriptionlabel = QTextBrowser(
openExternalLinks=True,
textInteractionFlags=(Qt.TextSelectableByMouse |
Qt.LinksAccessibleByMouse)
)
self.descriptionlabel.setFrameStyle(QTextBrowser.NoFrame)
# no (white) text background
self.descriptionlabel.viewport().setAutoFillBackground(False)
box.layout().addWidget(self.descriptionlabel)
self.splitter.addWidget(self.view)
self.splitter.addWidget(box)
self.splitter.setSizes([300, 200])
self.splitter.splitterMoved.connect(
lambda:
setattr(self, "splitter_state", bytes(self.splitter.saveState()))
)
self.mainArea.layout().addWidget(self.splitter)
self.controlArea.layout().addStretch(10)
gui.auto_commit(self.controlArea, self, "auto_commit", "Send Data")
proxy = QSortFilterProxyModel()
proxy.setFilterKeyColumn(-1)
proxy.setFilterCaseSensitivity(False)
self.view.setModel(proxy)
if self.splitter_state:
self.splitter.restoreState(self.splitter_state)
self.assign_delegates()
self.setBlocking(True)
self.setStatusMessage("Initializing")
self._executor = ThreadPoolExecutor(max_workers=1)
f = self._executor.submit(self.list_remote)
w = FutureWatcher(f, parent=self)
w.done.connect(self.__set_index)
def _create_layout(self):
box = gui.widgetBox(self.controlArea, "Cloud preferences")
gui.checkBox(
box,
self,
"words_color",
"Color words",
callback=self.on_cloud_pref_change,
)
gui.valueSlider(
box,
self,
"words_tilt",
label="Words tilt:",
values=list(range(len(TILT_VALUES))),
callback=self.on_cloud_pref_change,
labelFormat=lambda x: TILT_VALUES[x],
)
box = gui.widgetBox(self.controlArea, "Words && weights")
class TableView(gui.TableView):
def __init__(self, parent):
super().__init__(parent)
self._parent = parent
self.__nope = False
def setModel(self, model):
"""Otherwise QTableView.setModel() calls
QAbstractItemView.setSelectionModel() which resets selection,
calling selectionChanged() and overwriting any selected_words
setting that may have been saved."""
self.__nope = True
super().setModel(model)
self.__nope = False
def selectionChanged(self, selected, deselected):
nonlocal model, proxymodel
super().selectionChanged(selected, deselected)
if not self.__nope:
words = {
model[proxymodel.mapToSource(index).row()][1]
for index in self.selectionModel().selectedIndexes()
}
self._parent.update_selection(words, self)
def update_selection(self, words):
nonlocal model, proxymodel
selection = QItemSelection()
for i, (_, word) in enumerate(model):
if word in words:
index = proxymodel.mapFromSource(model.index(i, 1))
selection.select(index, index)
self.__nope = True
self.clearSelection()
self.selectionModel().select(
selection,
QItemSelectionModel.Select | QItemSelectionModel.Rows,
)
self.__nope = False
view = self.tableview = TableView(self)
model = self.tablemodel = TableModel(2, parent=self)
proxymodel = QSortFilterProxyModel(
self,
dynamicSortFilter=True,
sortCaseSensitivity=Qt.CaseInsensitive,
sortRole=Qt.EditRole,
)
proxymodel.setSourceModel(model)
model.setHorizontalHeaderLabels(["Weight", "Word"])
view.setModel(proxymodel)
box.layout().addWidget(view)
def _onItemsCompleted(self):
self.setBlocking(False)
self.progressBarFinished()
self.setEnabled(True)
try:
self.map_input_to_ensembl, geneinfo = self.itemsfuture.result()
finally:
self.itemsfuture = None
self.geneinfo = geneinfo
self.cells = cells = []
self.row2geneinfo = {}
for i, (input_name, gi) in enumerate(geneinfo):
if gi:
row = []
for item in gi:
row.append(item)
# parse synonyms
row[HEADER_SCHEMA['Synonyms']] = ','.join(
row[HEADER_SCHEMA['Synonyms']])
cells.append(row)
self.row2geneinfo[len(cells) - 1] = i
model = TreeModel(cells, list(HEADER_SCHEMA.keys()), None)
proxyModel = QSortFilterProxyModel(self)
proxyModel.setSourceModel(model)
self.treeWidget.setModel(proxyModel)
self.treeWidget.selectionModel().selectionChanged.connect(self.commit)
for i in range(len(HEADER_SCHEMA)):
self.treeWidget.resizeColumnToContents(i)
self.treeWidget.setColumnWidth(
i, min(self.treeWidget.columnWidth(i), 200))
self.infoLabel.setText("%i genes\n%i matched NCBI's IDs" %
(len(self.genes), len(cells)))
self.matchedInfo = len(self.genes), len(cells)
if self.useAttr:
new_data = self.data.from_table(self.data.domain, self.data)
for gene_var in new_data.domain.attributes:
gene_var.attributes['Ensembl ID'] = str(
self.map_input_to_ensembl[gene_var.name])
self.Outputs.data.send(new_data)
elif self.attributes:
ensembl_ids = []
for gene_name in self.data.get_column_view(
self.attributes[self.gene_attr])[0]:
if gene_name and gene_name in self.map_input_to_ensembl:
ensembl_ids.append(self.map_input_to_ensembl[gene_name])
else:
ensembl_ids.append('')
data_with_ensembl = append_columns(
self.data,
metas=[(Orange.data.StringVariable('Ensembl ID'), ensembl_ids)
])
self.Outputs.data.send(data_with_ensembl)
