def show(self):
global dialog
global ui
ui = Ui_frmFEDictionaryLearning()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget.setCurrentIndex(0)
ui.cbFit.addItem("lars")
ui.cbFit.addItem("cd")
ui.cbTransform.addItem("omp")
ui.cbTransform.addItem("lasso_lars")
ui.cbTransform.addItem("lasso_c")
ui.cbTransform.addItem("lars")
ui.cbTransform.addItem("threshold")
dialog.setWindowTitle("easy fMRI Dictionary Learning - V" +
getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmMAKMeans()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget.setCurrentIndex(0)
# Init
ui.cbInit.addItem("k-means++")
ui.cbInit.addItem("random")
# Pre
ui.cbPrecompute.addItem("Auto", "auto")
ui.cbPrecompute.addItem("True", True)
ui.cbPrecompute.addItem("False", False)
# Alg
ui.cbAlgorithm.addItem("Auto", "auto")
ui.cbAlgorithm.addItem("Triangle Inequality", "elkan")
ui.cbAlgorithm.addItem("EM-style Algorithm", "full")
dialog.setWindowTitle("easy fMRI KMeans Clustering - V" +
getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmNITFAFNI()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
afni = AFNI()
afni.setting()
if not afni.Validate:
msgBox = QMessageBox()
msgBox.setText("Cannot find AFNI setting!")
msgBox.setIcon(QMessageBox.Critical)
msgBox.setStandardButtons(QMessageBox.Ok)
msgBox.exec_()
else:
ui.txtFAFNI.setText(afni.COPY)
ui.txtFSUMA.setText(afni.REFIT)
dialog.setWindowTitle("easy fMRI Convert Nifti1 to AFNI - V" +
getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmMASVM()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget.setCurrentIndex(0)
# Kernels
ui.cbKernel.addItem("rbf")
ui.cbKernel.addItem("linear")
ui.cbKernel.addItem("poly")
ui.cbKernel.addItem("sigmoid")
# Mode
ui.cbMode.addItem("One vs. All", "ovr")
ui.cbMode.addItem("One vs. One", "ovo")
# Precision Avg
ui.cbPrecisionAvg.addItem("weighted", "weighted")
ui.cbPrecisionAvg.addItem("micro", "micro")
ui.cbPrecisionAvg.addItem("macro", "macro")
ui.cbPrecisionAvg.addItem("binary", "binary")
ui.cbPrecisionAvg.addItem("samples", "samples")
ui.cbPrecisionAvg.addItem("None", None)
# Average of Precistion Avg
ui.cbAPrecisionAvg.addItem("macro", "macro")
ui.cbAPrecisionAvg.addItem("weighted", "weighted")
ui.cbAPrecisionAvg.addItem("micro", "micro")
ui.cbAPrecisionAvg.addItem("samples", "samples")
ui.cbAPrecisionAvg.addItem("None", None)
# Recall
ui.cbRecallAvg.addItem("weighted", "weighted")
ui.cbRecallAvg.addItem("micro", "micro")
ui.cbRecallAvg.addItem("macro", "macro")
ui.cbRecallAvg.addItem("binary", "binary")
ui.cbRecallAvg.addItem("samples", "samples")
ui.cbRecallAvg.addItem("None", None)
# f1 score
ui.cbF1Avg.addItem("weighted", "weighted")
ui.cbF1Avg.addItem("micro", "micro")
ui.cbF1Avg.addItem("macro", "macro")
ui.cbF1Avg.addItem("binary", "binary")
ui.cbF1Avg.addItem("samples", "samples")
ui.cbF1Avg.addItem("None", None)
dialog.setWindowTitle("easy fMRI C Support Vector Classification - V" +
getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmMADeepGroupRSA()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget.setCurrentIndex(0)
# Activation
ui.cbActivation.addItem('Sigmoid', 'sigmoid')
ui.cbActivation.addItem('ReLU', 'relu')
ui.cbActivation.addItem('Tanh', 'tanh')
# LASSO Norm
ui.cbLossNorm.addItem('Euclidean', 'euclidean')
ui.cbLossNorm.addItem('Supremum', np.inf)
# Device
ui.cbDevice.addItem("Auto", False)
ui.cbDevice.addItem("Just CPU", True)
dialog.setWindowTitle(
"easy fMRI Group Level Single-Deep-Kernel Representational Similarity Analysis - V"
+ getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmAAAtlas()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget.setCurrentIndex(0)
ui.txtEvents = api.CodeEdit(ui.tab_2)
ui.txtEvents.setGeometry(QtCore.QRect(10, 10, 641, 200))
ui.txtEvents.setObjectName("txtEvents")
ui.txtEvents.backend.start('backend/server.py')
ui.txtEvents.modes.append(modes.CodeCompletionMode())
ui.txtEvents.modes.append(modes.CaretLineHighlighterMode())
ui.txtEvents.modes.append(
modes.PygmentsSyntaxHighlighter(ui.txtEvents.document()))
ui.txtEvents.panels.append(panels.LineNumberPanel(),
api.Panel.Position.LEFT)
font = QtGui.QFont()
font.setBold(True)
font.setWeight(75)
ui.txtEvents.setFont(font)
ui.txtEvents.setPlainText(EventCode(), "", "")
dialog.setWindowTitle("easy fMRI Atlas based analysis - V" +
getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmFAPCA()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget.setCurrentIndex(0)
# Kenel List
ui.cbKernel.addItem("linear")
ui.cbKernel.addItem("poly")
ui.cbKernel.addItem("rbf")
ui.cbKernel.addItem("sigmoid")
ui.cbKernel.addItem("cosine")
# Method
ui.cbMethod.addItem("PCA")
ui.cbMethod.addItem("Kernel PCA")
ui.cbMethod.addItem("Incremental PCA")
ui.txtNumFea.setMinimum(0)
ui.txtNumFea.setValue(0)
dialog.setWindowTitle("easy fMRI PCA Functional Alignment - V" +
getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
global OutSize, currentFile, currentSize
ui = Ui_frmCombineROI()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tvArea.setColumnCount(2)
ui.tvArea.setHeaderLabels(['Affine', 'File'])
ui.tvArea.setColumnWidth(0, 50)
ui.cbMetric.addItem("Intersection", "int")
ui.cbMetric.addItem("Union", "uni")
dialog.setWindowTitle("easy fMRI combine ROI - V" + getVersion() +
"B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmFAKHA()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget.setCurrentIndex(0)
# Kenel List
ui.cbKernel.addItem("linear")
ui.cbKernel.addItem("poly")
ui.cbKernel.addItem("rbf")
ui.cbKernel.addItem("sigmoid")
ui.cbKernel.addItem("cosine")
# Method
ui.cbMethod.addItem("PCA")
ui.cbMethod.addItem("Kernel PCA")
ui.cbMethod.addItem("Incremental PCA")
dialog.setWindowTitle(
"easy fMRI Kernel/SVD Hyperalignment (direct solution, with trans. matrix) - V"
+ getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmFASRM()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget.setCurrentIndex(0)
# Method
ui.cbMethod.addItem("Probabilistic SRM")
ui.cbMethod.addItem("Deterministic SRM")
ui.cbMethod.addItem("Robust SRM")
ui.txtLic.setPlainText(Lic())
ui.txtLic.setReadOnly(True)
ui.txtNumFea.setMinimum(0)
ui.txtNumFea.setValue(0)
dialog.setWindowTitle("easy fMRI Shared Response Model (SRM) - V" +
getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmMASpectral()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget.setCurrentIndex(0)
# Init
ui.cbESolver.addItem("None", None)
ui.cbESolver.addItem("arpack", "arpack")
ui.cbESolver.addItem("lobpcg", "lobpcg")
ui.cbESolver.addItem("AMG (need pyamg)", "amg")
# Pre
ui.cbAffinity.addItem("RBF", "rbf")
ui.cbAffinity.addItem("Nearest Neighbors", "nearest_neighbors")
ui.cbAffinity.addItem("Precomputed", "precomputed")
# Alg
ui.cbAssignLabels.addItem("KMeans", "kmeans")
ui.cbAssignLabels.addItem("Discretize", "discretize")
dialog.setWindowTitle("easy fMRI Spectral Clustering - V" +
getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmFEKPCA()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget.setCurrentIndex(0)
# Kenel List
ui.cbKernel.addItem("linear")
ui.cbKernel.addItem("poly")
ui.cbKernel.addItem("rbf")
ui.cbKernel.addItem("sigmoid")
ui.cbKernel.addItem("cosine")
dialog.setWindowTitle(
"easy fMRI Kernel Principal Component Analysis (PCA) - V" +
getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self, Jobs=None, parentin=None):
global dialog, ui, parent, JRunner, JobList, JobListBack
ui = Ui_frmJobs()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
JobList = Jobs
JRunner = None
if parentin is not None:
dialog = MainWindow(parentin, JRunner)
else:
dialog = MainWindow()
ui.setupUi(dialog)
self.set_events(self)
self.refresh_list(self)
ui.tabWidget.setCurrentIndex(0)
ui.lvJobs.setColumnCount(4)
ui.lvJobs.setHeaderLabels(['ID', 'Type', 'Status', 'File'])
ui.lvJobs.setColumnWidth(0, 50)
ui.lvJobs.setColumnWidth(1, 150)
ui.lvJobs.setColumnWidth(2, 150)
dialog.setWindowTitle("easy fMRI Job Manager - V" + getVersion() +
"B" + getBuild())
dialog.show()
def show(self):
from Base.utility import getDirSpace, getDirSpaceINI
global dialog
global ui
ui = Ui_frmWholeBrainROI()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget_2.setCurrentIndex(0)
# Load Setting History
history = History()
histories = history.load_history()
ui.txtSSSetting.clear()
for history in histories:
ui.txtSSSetting.addItem(history)
ui.txtSSSetting.setCurrentText("")
# Default Values for Input File
ui.txtSSInFile.addItem(
"$MAINDIR$/sub-$SUB$/func/sub-$SUB$_task-$TASK$_run-$RUN$_analyze.feat/mask.nii.gz"
)
ui.txtSSInFile.addItem(
"$MAINDIR$/sub-$SUB$/func/sub-$SUB$_task-$TASK$_run-$RUN$_analyze.feat/std_mask.nii.gz"
)
# Default Values for Metric
ui.cbMetric.addItem("Intersection of voxels from all masks", "inter")
# Default Values for Space
ui.txtSSSpace.addItem(DefaultSpace())
ProgramPath = os.path.dirname(os.path.abspath(__file__))
try:
spaceINI = str.rsplit(open(getDirSpaceINI()).read(), "\n")
for space in spaceINI:
if len(space):
ui.txtSSSpace.addItem(getDirSpace() + space)
ui.txtSSSpace.setCurrentIndex(0)
except:
msgBox = QMessageBox()
msgBox.setText("Cannot find MNI files!")
msgBox.setIcon(QMessageBox.Critical)
msgBox.setStandardButtons(QMessageBox.Ok)
msgBox.exec_()
dialog.setWindowTitle("easy fMRI whole brain ROI - V" + getVersion() +
"B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
from Base.utility import getVersion, getBuild
global dialog, ui
ui = Ui_frmMainMenuGUI()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
tools = Tools()
tools.combo(ui.cbTools)
try:
ezdir = str(os.environ['EASYFMRI'])
if len(ezdir):
ui.txtEZDIR.setText(ezdir)
assert os.path.isfile(ezdir + "/main.py")
print("Easy fMRI directory is " + ezdir)
else:
print(
"WARNING: cannot find $EASYFMRI! Please setup ~/.startupscript.sh"
)
msgBox = QMessageBox()
msgBox.setText(
"WARNING: cannot find $EASYFMRI! Please setup ~/.startupscript.sh"
)
msgBox.setIcon(QMessageBox.Critical)
msgBox.setStandardButtons(QMessageBox.Ok)
msgBox.exec_()
except:
print(
"WARNING: cannot find $EASYFMRI! Please setup ~/.startupscript.sh"
)
msgBox = QMessageBox()
msgBox.setText(
"WARNING: cannot find $EASYFMRI! Please setup ~/.startupscript.sh"
)
msgBox.setIcon(QMessageBox.Critical)
msgBox.setStandardButtons(QMessageBox.Ok)
msgBox.exec_()
ui.cbSource.addItem(
"GitLab", ["gitlab.com/easyfmri/easyfmri.git", "https", False])
ui.cbSource.addItem(
"GitHub", ["github.com/easyfmri/easyfmri.git", "https", False])
dialog.setWindowTitle("easy fMRI - V" + getVersion() + "B" +
getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmSKModelEditor()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget.setCurrentIndex(0)
ui.lwData.setColumnCount(4)
ui.lwData.setHeaderLabels(['Name', 'Class', 'Shape', 'Value'])
ui.lwData.setColumnWidth(0, 200)
# Precision Avg
ui.cbPrecisionAvg.addItem("weighted", "weighted")
ui.cbPrecisionAvg.addItem("micro", "micro")
ui.cbPrecisionAvg.addItem("macro", "macro")
ui.cbPrecisionAvg.addItem("binary", "binary")
ui.cbPrecisionAvg.addItem("samples", "samples")
ui.cbPrecisionAvg.addItem("None", None)
# Average of Precistion Avg
ui.cbAPrecisionAvg.addItem("macro", "macro")
ui.cbAPrecisionAvg.addItem("weighted", "weighted")
ui.cbAPrecisionAvg.addItem("micro", "micro")
ui.cbAPrecisionAvg.addItem("samples", "samples")
ui.cbAPrecisionAvg.addItem("None", None)
# Recall
ui.cbRecallAvg.addItem("weighted", "weighted")
ui.cbRecallAvg.addItem("micro", "micro")
ui.cbRecallAvg.addItem("macro", "macro")
ui.cbRecallAvg.addItem("binary", "binary")
ui.cbRecallAvg.addItem("samples", "samples")
ui.cbRecallAvg.addItem("None", None)
# f1 score
ui.cbF1Avg.addItem("weighted", "weighted")
ui.cbF1Avg.addItem("micro", "micro")
ui.cbF1Avg.addItem("macro", "macro")
ui.cbF1Avg.addItem("binary", "binary")
ui.cbF1Avg.addItem("samples", "samples")
ui.cbF1Avg.addItem("None", None)
dialog.setWindowTitle("easy fMRI SK Classification Model Viewer - V" +
getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmMAClassicNetworkROI()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget.setCurrentIndex(0)
# Metric
ui.txtMetric = api.CodeEdit(ui.tab_5)
ui.txtMetric.setGeometry(QtCore.QRect(10, 10, 700, 350))
ui.txtMetric.setObjectName("txtMetric")
ui.txtMetric.backend.start('backend/server.py')
ui.txtMetric.modes.append(modes.CodeCompletionMode())
ui.txtMetric.modes.append(modes.CaretLineHighlighterMode())
ui.txtMetric.modes.append(
modes.PygmentsSyntaxHighlighter(ui.txtMetric.document()))
ui.txtMetric.panels.append(panels.LineNumberPanel(),
api.Panel.Position.LEFT)
font = QtGui.QFont()
font.setBold(True)
font.setWeight(75)
ui.txtMetric.setFont(font)
ui.txtMetric.setPlainText(MetricCode(), "", "")
# Integration
ui.txtIntegration = api.CodeEdit(ui.tab_3)
ui.txtIntegration.setGeometry(QtCore.QRect(10, 10, 700, 350))
ui.txtIntegration.setObjectName("txtIntegration")
ui.txtIntegration.backend.start('backend/server.py')
ui.txtIntegration.modes.append(modes.CodeCompletionMode())
ui.txtIntegration.modes.append(modes.CaretLineHighlighterMode())
ui.txtIntegration.modes.append(
modes.PygmentsSyntaxHighlighter(ui.txtIntegration.document()))
ui.txtIntegration.panels.append(panels.LineNumberPanel(),
api.Panel.Position.LEFT)
font = QtGui.QFont()
font.setBold(True)
font.setWeight(75)
ui.txtIntegration.setFont(font)
ui.txtIntegration.setPlainText(IntegrationCode(), "", "")
dialog.setWindowTitle(
"easy fMRI Classic Network Analysis (ROI-based) - V" +
getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self, filename=None, pwd=None):
global dialog
global ui
global data
global root
global currentFile
ui = Ui_frmDataEditor()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.lwData.setColumnCount(4)
ui.lwData.setHeaderLabels(['Name', 'Class', 'Shape', 'Value'])
ui.lwData.setColumnWidth(0, 200)
dialog.setWindowTitle("easy fMRI Data Editor - V" + getVersion() +
"B" + getBuild())
ui.tabWidget.setCurrentIndex(0)
ui.tabWidget2.setCurrentIndex(0)
layout = QHBoxLayout(ui.Code)
ui.txtCode = api.CodeEdit(ui.Code)
layout.addWidget(ui.txtCode)
ui.txtCode.setObjectName("txtCode")
ui.txtCode.backend.start(getDIR() + '/backend/server.py')
ui.txtCode.modes.append(modes.CodeCompletionMode())
ui.txtCode.modes.append(modes.CaretLineHighlighterMode())
ui.txtCode.modes.append(
modes.PygmentsSyntaxHighlighter(ui.txtCode.document()))
ui.txtCode.panels.append(panels.SearchAndReplacePanel(),
api.Panel.Position.TOP)
ui.txtCode.panels.append(panels.LineNumberPanel(),
api.Panel.Position.LEFT)
ui.lblCodeFile.setText("New File")
currentFile = None
font = QtGui.QFont()
font.setBold(True)
font.setWeight(75)
ui.txtCode.setFont(font)
ui.txtCode.setPlainText(DefaultCode(), "", "")
root = queue.Queue()
data = None
if filename is not None:
if os.path.isfile(filename):
self.OpenFile(self, filename)
elif pwd is not None:
if os.path.isfile(pwd + "/" + filename):
self.OpenFile(self, pwd + "/" + filename)
else:
print("Data file cannot find!")
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmMatNITF()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget.setCurrentIndex(0)
# SS Default Values for Space
try:
spaceINI = str.rsplit(open(getDirSpaceINI()).read(), "\n")
for space in spaceINI:
if len(space):
ui.txtSSSpace.addItem(getDirSpace() + space)
ui.txtSSSpace.setCurrentIndex(1)
except:
msgBox = QMessageBox()
msgBox.setText("Cannot find MNI files!")
msgBox.setIcon(QMessageBox.Critical)
msgBox.setStandardButtons(QMessageBox.Ok)
msgBox.exec_()
afni = AFNI()
afni.setting()
if not afni.Validate:
msgBox = QMessageBox()
msgBox.setText("Cannot find AFNI setting!")
msgBox.setIcon(QMessageBox.Critical)
msgBox.setStandardButtons(QMessageBox.Ok)
msgBox.exec_()
else:
ui.txtFAFNI.setText(afni.COPY)
ui.txtFSUMA.setText(afni.REFIT)
# Default Values for Threshold type
ui.cbThType.addItem("Without Thresholding", "no")
ui.cbThType.addItem("Minimum Thresholding", "min")
ui.cbThType.addItem("Maximum Thresholding", "max")
ui.cbThType.addItem("Extremum Thresholding", "ext")
dialog.setWindowTitle("easy fMRI Convert Matrix to Nifti1 - V" +
getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmMABayesianRSA()
QtWidgets.QApplication.setStyle(QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget.setCurrentIndex(0)
# Method
ui.cbMethod.addItem("Bayesian RSA","brsa")
ui.cbMethod.addItem("Group Bayesian RSA","gbrsa")
# Nureg Method
ui.cbNuregMethod.addItem("PCA", "PCA")
ui.cbNuregMethod.addItem("ICA", "ICA")
ui.cbNuregMethod.addItem("Factor Analysis", "FA")
ui.cbNuregMethod.addItem("Sparse PCA", "SPCA")
# Tau2Prior
ui.cbTau2Prior.addItem("Gamma", prior_GP_var_inv_gamma)
ui.cbTau2Prior.addItem("Half Cauchy", prior_GP_var_half_cauchy)
# SNR_prior
ui.cbSNRPrior.addItem("Exponential", "exp")
ui.cbSNRPrior.addItem("Log Norm", "lognorm")
ui.cbSNRPrior.addItem("Uniform", "unif")
# Base
ui.txtEvents = api.CodeEdit(ui.tab_7)
ui.txtEvents.setGeometry(QtCore.QRect(10, 10, 700, 500))
ui.txtEvents.setObjectName("txtEvents")
ui.txtEvents.backend.start('backend/server.py')
ui.txtEvents.modes.append(modes.CodeCompletionMode())
ui.txtEvents.modes.append(modes.CaretLineHighlighterMode())
ui.txtEvents.modes.append(modes.PygmentsSyntaxHighlighter(ui.txtEvents.document()))
ui.txtEvents.panels.append(panels.LineNumberPanel(),api.Panel.Position.LEFT)
font = QtGui.QFont()
font.setBold(True)
font.setWeight(75)
ui.txtEvents.setFont(font)
ui.txtEvents.setPlainText(OptimizationCode(),"","")
ui.txtLic.setText(Lic())
dialog.setWindowTitle("easy fMRI Bayesian RSA - V" + getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags() | QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags() & ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self, parentin=None):
from Base.utility import getVersion, getBuild
global dialog, ui, parent
ui = Ui_frmModelAnalysis()
QtWidgets.QApplication.setStyle(QtWidgets.QStyleFactory.create('Fusion'))
if parentin is not None:
dialog = MainWindow(parentin)
else:
dialog = MainWindow()
ui.setupUi(dialog)
self.set_events(self)
tools = Tools()
tools.combo(ui.cbTools)
ui.tabWidget.setCurrentIndex(0)
# Unsupervised
ui.cbMAU.addItem("Shared Similarity Analysis (SSA)", 30000)
ui.cbMAU.addItem("RSA (Group Level)", 20008)
ui.cbMAU.addItem("Bayesian RSA (Group Level)", 20001)
ui.cbMAU.addItem("Gradient RSA (Group Level)", 20003)
ui.cbMAU.addItem("Encoding Analysis (Session Level)", 20007)
ui.cbMAU.addItem("Gradient Encoding Analysis (Session Level) ", 20002)
ui.cbMAU.addItem("Classic Network Analysis ", 40000)
ui.cbMAU.addItem("Classic Network Analysis (ROI-based)", 40001)
ui.cbMAU.addItem("Clustering: Agglomerative", 10002)
ui.cbMAU.addItem("Clustering: Birch", 10003)
ui.cbMAU.addItem("Clustering: Gaussian Mixture", 10004)
ui.cbMAU.addItem("Clustering: KMeans", 10000)
ui.cbMAU.addItem("Clustering: Spectral", 10001)
# Supervised
ui.cbMAS.addItem("PyTorch (GPU) Support Vector Machine",10003)
ui.cbMAS.addItem("SK Classification: AdaBoost",80005)
ui.cbMAS.addItem("SK Classification: Decision Tree",80001)
ui.cbMAS.addItem("SK Classification: Gaussian Naive Bayes",80000)
ui.cbMAS.addItem("SK Classification: Linear Support Vector Machine (liblinear)",10001)
ui.cbMAS.addItem("SK Classification: Multi-Layer Perceptron (MLP)",80002)
ui.cbMAS.addItem("SK Classification: Nu Support Vector Machine (libsvm)",10002)
ui.cbMAS.addItem("SK Classification: Random Forest",80004)
ui.cbMAS.addItem("SK Classification: Stochastic Gradient Descent based approaches",80003)
ui.cbMAS.addItem("SK Classification: Support Vector Machine (libsvm)",10000)
ui.cbMAS.addItem("Atlas-based ensemble analysis", 99999)
dialog.setWindowTitle("easy fMRI model analysis - V" + getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags() | QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags() & ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmMAGNB()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget.setCurrentIndex(0)
# Precision Avg
ui.cbPrecisionAvg.addItem("weighted", "weighted")
ui.cbPrecisionAvg.addItem("micro", "micro")
ui.cbPrecisionAvg.addItem("macro", "macro")
ui.cbPrecisionAvg.addItem("binary", "binary")
ui.cbPrecisionAvg.addItem("samples", "samples")
ui.cbPrecisionAvg.addItem("None", None)
# Average of Precistion Avg
ui.cbAPrecisionAvg.addItem("macro", "macro")
ui.cbAPrecisionAvg.addItem("weighted", "weighted")
ui.cbAPrecisionAvg.addItem("micro", "micro")
ui.cbAPrecisionAvg.addItem("samples", "samples")
ui.cbAPrecisionAvg.addItem("None", None)
# Recall
ui.cbRecallAvg.addItem("weighted", "weighted")
ui.cbRecallAvg.addItem("micro", "micro")
ui.cbRecallAvg.addItem("macro", "macro")
ui.cbRecallAvg.addItem("binary", "binary")
ui.cbRecallAvg.addItem("samples", "samples")
ui.cbRecallAvg.addItem("None", None)
# f1 score
ui.cbF1Avg.addItem("weighted", "weighted")
ui.cbF1Avg.addItem("micro", "micro")
ui.cbF1Avg.addItem("macro", "macro")
ui.cbF1Avg.addItem("binary", "binary")
ui.cbF1Avg.addItem("samples", "samples")
ui.cbF1Avg.addItem("None", None)
dialog.setWindowTitle("easy fMRI Gaussian Naive Bayes - V" +
getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmCombineData()
QtWidgets.QApplication.setStyle(QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
dialog.setWindowTitle("easy fMRI combine data - V" + getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags() | QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags() & ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self, parentin=None):
from Base.utility import getVersion, getBuild, getDirSpaceINI, getDirSpace
global dialog, ui, parent
ui = Ui_frmVisalization()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
if parentin is not None:
dialog = MainWindow(parentin)
else:
dialog = MainWindow()
ui.setupUi(dialog)
ui.tabWidget.setCurrentIndex(0)
self.set_events(self)
tools = Tools()
tools.combo(ui.cbTools)
ui.cbHemisphere.addItem("Both")
ui.cbHemisphere.addItem("Left")
ui.cbHemisphere.addItem("Right")
afni = AFNI()
afni.setting()
if not afni.Validate:
msgBox = QMessageBox()
msgBox.setText("Cannot find AFNI setting!")
msgBox.setIcon(QMessageBox.Critical)
msgBox.setStandardButtons(QMessageBox.Ok)
msgBox.exec_()
else:
ui.txtFAFNI.setText(afni.AFNI)
ui.txtFSUMA.setText(afni.SUMA)
ui.txtDSUMA.setText(afni.SUMADIR)
ui.txtSUMAMNI.setText(afni.MNI)
ui.txtBSUMA.setText(afni.Both)
ui.txtLSUMA.setText(afni.Left)
ui.txtRSUMA.setText(afni.Right)
dialog.setWindowTitle("easy fMRI visualization - V" + getVersion() +
"B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmTAInterSec()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget.setCurrentIndex(0)
dialog.setWindowTitle(
"easy fMRI Temporal Alignment with Intersection strategy- V" +
getVersion() + "B" + getBuild())
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmDataEditor()
QtWidgets.QApplication.setStyle(QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.lwData.setColumnCount(4)
ui.lwData.setHeaderLabels(['Name','Class','Shape','Value'])
ui.lwData.setColumnWidth(0,200)
dialog.setWindowTitle("easy fMRI Data Viewer - V" + getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags() | QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags() & ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
from Base.utility import getVersion,getBuild
global dialog, ui
ui = Ui_frmMainMenuGUI()
QtWidgets.QApplication.setStyle(QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
tools = Tools()
tools.combo(ui.cbTools)
dialog.setWindowTitle("easy fMRI - V" + getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags() | QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags() & ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
global data
ui = Ui_frmAAVoxelSelection()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget.setCurrentIndex(0)
# Clear Views
ui.vwSele.clear()
ui.vwSele.setColumnCount(2)
ui.vwSele.setRowCount(0)
ui.vwSele.setColumnWidth(0, 120)
ui.vwSele.setColumnWidth(1, 100)
ui.vwSele.setHorizontalHeaderLabels(['Coordinate', 'Accuracy'])
ui.vwSele.setSortingEnabled(True)
ui.vwSele.setSelectionMode(QtWidgets.QAbstractItemView.MultiSelection)
ui.vwSele.setSelectionBehavior(QAbstractItemView.SelectRows)
ui.vwAvai.clear()
ui.vwAvai.setColumnCount(2)
ui.vwSele.setRowCount(0)
ui.vwAvai.setColumnWidth(0, 120)
ui.vwAvai.setColumnWidth(1, 100)
ui.vwAvai.setHorizontalHeaderLabels(['Coordinate', 'Accuracy'])
ui.vwAvai.setSortingEnabled(True)
ui.vwAvai.setSelectionMode(QtWidgets.QAbstractItemView.MultiSelection)
ui.vwAvai.setSelectionBehavior(QAbstractItemView.SelectRows)
data = None
dialog.setWindowTitle(
"easy fMRI Voxel-based analysis: Voxel Selection - V" +
getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmRemoveRestScanCross()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
dialog.setWindowTitle(
"easy fMRI remove rest scans (after cross validation) - V" +
getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()
def show(self):
global dialog
global ui
ui = Ui_frmFEConv4D2D()
QtWidgets.QApplication.setStyle(
QtWidgets.QStyleFactory.create('Fusion'))
dialog = QtWidgets.QMainWindow()
ui.setupUi(dialog)
self.set_events(self)
ui.tabWidget.setCurrentIndex(0)
dialog.setWindowTitle("easy fMRI Convert 4D data to 2D - V" +
getVersion() + "B" + getBuild())
dialog.setWindowFlags(dialog.windowFlags()
| QtCore.Qt.CustomizeWindowHint)
dialog.setWindowFlags(dialog.windowFlags()
& ~QtCore.Qt.WindowMaximizeButtonHint)
dialog.setFixedSize(dialog.size())
dialog.show()