def test_total_numbers_events_and_samples(self):
self.startup()
names = sampnames_scattered(self.comm, self.tmpdirs, self.ext)
N, J = total_number_events_and_samples(
self.comm, names, datadirs=self.tmpdirs, ext=self.ext,
loadfilef=self.loadfilef)
self.assertEqual(N, self.N)
self.assertEqual(J, self.J)
def test_sampnames_scattered(self):
self.startup()
names = sampnames_scattered(self.comm, self.tmpdirs, self.ext)
self.assertTrue(len(names) <= self.J/self.comm.Get_size()+1)
allnames = self.comm.gather(names)
if self.rank == 0:
allnames = [name for names_ in allnames for name in names_]
self.assertEqual(set(allnames), set(self.names))
"""
from __future__ import division
import BayesFlow as bf
from BayesFlow.utils import Timer
from BayesFlow.utils.dat_util import sampnames_scattered
from example_util import retrieve_healthyFlowData, load_setup_HF, get_J
timer = Timer()
retrieve_healthyFlowData(data_kws['datadirs'][0])
metadata = {
'marker_lab': data_kws.pop('marker_lab'),
'samp': {
'names': sampnames_scattered(comm, data_kws['datadirs'],
data_kws['ext'])
}
}
print "metadata['samp']['names'] = {}".format(metadata['samp']['names'])
timer.timepoint('retrieve data')
'''
Initialization
'''
setupfile, setup = load_setup_HF(setupdir, setupno)
savedir, run = bf.setup_sim(expdir, seed,
setupfile) # copies experiment setup and set seed
prior, simpar, postpar = setup(get_J(metadata['samp']['names']), Nevent,
testrun)
if rank == 0:
def test_total_number_samples(self):
self.startup()
names = sampnames_scattered(self.comm, self.tmpdirs, self.ext)
self.assertEqual(total_number_samples(self.comm, names), self.J)