Beispiel #1
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    def __init__(self, alphabet = Alphabet.Gapped(IUPAC.ambiguous_dna)):
        Alignment.__init__(self, alphabet)

        # represent all of those stars in the aln output format
        self._star_info = ''
        
        self._version = ''
 def __init__(self, alphabet = Alphabet.Gapped(IUPAC.ambiguous_dna)):
     Alignment.__init__(self, alphabet)
 def __init__(self):
     Alignment.__init__(self, Gapped(IUPAC.unambiguous_dna, '-'))
Beispiel #4
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 def __init__(self, alphabet = Alphabet.Gapped(IUPAC.ambiguous_dna)):
     Alignment.__init__(self, alphabet)
Beispiel #5
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 def __init__(self):
     Alignment.__init__(self, Gapped(IUPAC.unambiguous_dna, '-'))
Beispiel #6
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 def __init__(self, *args, **kwargs):
     GenericAlignment.__init__(self, *args, **kwargs)