def test_simple_example(self):
alignments = list(EmbossIterator(StringIO(simple_example)))
self.assertEqual(len(alignments), 1)
self.assertEqual(len(alignments[0]), 4)
self.assertEqual(
[r.id for r in alignments[0]], ["IXI_234", "IXI_235", "IXI_236", "IXI_237"]
)
def test_pair_example2(self):
alignments = list(EmbossIterator(StringIO(pair_example2)))
self.assertEqual(len(alignments), 5)
self.assertEqual(len(alignments[0]), 2)
self.assertEqual([r.id for r in alignments[0]],
["ref_rec", "gi|94968718|receiver"])
self.assertEqual([r.id for r in alignments[4]],
["ref_rec", "gi|94970041|receiver"])
def test_pair_example3(self):
alignments = list(EmbossIterator(StringIO(pair_example3)))
self.assertEqual(len(alignments), 1)
self.assertEqual(len(alignments[0]), 2)
self.assertEqual([r.id for r in alignments[0]], ["asis", "asis"])