def _create_qresult(self, hit_blocks):
"""Create the Biopython data structures from the parsed data (PRIVATE)."""
query_id = self.query_id
hit_dict = OrderedDict()
for output_index, block in enumerate(hit_blocks):
hit_id = block['hit_id']
frag = HSPFragment(hit_id, query_id)
# frag.alphabet = generic_protein
if block['query_start']:
frag.query_start = block['query_start'] - 1
else:
frag.query_start = block['query_start']
frag.query_end = block['query_end']
if block['hit_start']:
frag.hit_start = block['hit_start'] - 1
else:
frag.hit_start = block['hit_start']
frag.hit_end = block['hit_end']
frag.hit = block['hit_seq']
frag.query = block['query_seq']
hsp = HSP([frag])
hsp.hit_id = hit_id
hsp.output_index = output_index
hsp.query_id = query_id
hsp.hit_description = block['description']
is_included = True # Should everything should be included?
hsp.is_included = is_included
hsp.evalue = block['evalue']
hsp.score = block['score']
hsp.prob = block['prob']
hsp.hit_seq_len = block['hit_seq_len']
hsp.text = block['text']
if hit_id not in hit_dict:
hit = Hit([hsp], hit_id)
hit.description = block['description']
hit.is_included = is_included
hit.evalue = block['evalue']
hit.score = block['score']
hit_dict[hit_id] = hit
else:
hit_dict[hit_id].append(hsp)
qresult = QueryResult(hit_dict.values(), query_id)
qresult.program = _PROGRAM
qresult.seq_len = self.seq_len
return [qresult]
