def _index_row_column(row: str, column: str) -> bpu.EL:
"""
get split of row or column in multi value
"""
comp = re.compile("(\w+)")
lrow = len(row)
lcolumn = len(re.findall(comp, column))
if lrow > 1 and lcolumn > 1:
value = BioPlateMatrix.__m_row_m_column(row, column)
return value
elif lrow == 1 and lcolumn == 1:
ro = BioPlateMatrix._well_letter_index(row)
return bpu.EL("W", int(ro), int(column))
elif lrow > 1 and lcolumn == 1:
row1, row2 = list(
map(
BioPlateMatrix._well_letter_index,
BioPlateMatrix._multi_row_column(row),
))
return bpu.EL("C", slice(int(row1), int(row2) + 1, 1), int(column))
else: # lcolumn > 1 and lrow == 1:
column1, column2 = sorted(
map(int, BioPlateMatrix._multi_row_column(column)))
ro = BioPlateMatrix._well_letter_index(row)
return bpu.EL("R", int(ro), slice(column1, column2 + 1, 1))
def _all_row_column(well: str) -> bpu.EL:
try:
index = int(well)
return bpu.EL("C", slice(1, None), index)
except ValueError:
index = BioPlateMatrix._well_letter_index(well)
return bpu.EL("R", index, slice(1, None))
def __m_row_m_column(row: str, column: str) -> bpu.EL:
val = re.compile("(\w+)")
comp = lambda x: list(BioPlateMatrix._multi_row_column(x))
iterator, selector = list(map(comp, [row, column]))
try:
row1, row2 = list(map(BioPlateMatrix._well_letter_index, selector))
column1, column2 = sorted(map(int, iterator))
return bpu.EL(
"C",
slice(int(row1),
int(row2) + 1, 1),
slice(int(column1),
int(column2) + 1, 1),
)
except ValueError:
row1, row2 = list(map(BioPlateMatrix._well_letter_index, iterator))
column1, column2 = sorted(map(int, [selector[0], selector[1]]))
return bpu.EL("R", slice(int(row1),
int(row2) + 1, 1),
slice(column1, column2 + 1, 1))
def test_general(self):
self.assertEqual(BioPlateMatrix("A2"), bpu.EL("W", 1, 2))
self.assertEqual(BioPlateMatrix("5G"), bpu.EL("W", 7, 5))
self.assertEqual(BioPlateMatrix("B[2,8]"),
bpu.EL("R", 2, slice(2, 9, 1)))
self.assertEqual(BioPlateMatrix("2[B-G]"),
bpu.EL("C", slice(2, 8, 1), 2))
self.assertEqual(BioPlateMatrix("A-G[1-8]"),
bpu.EL("R", slice(1, 8, 1), slice(1, 9, 1)))
self.assertEqual(BioPlateMatrix("1-8[A-G]"),
bpu.EL("C", slice(1, 8, 1), slice(1, 9, 1)))
self.assertEqual(BioPlateMatrix("C"), bpu.EL("R", 3, slice(1, None)))
self.assertEqual(BioPlateMatrix("12"), bpu.EL("C", slice(1, None), 12))
def test_index_row_column(self):
self.assertEqual(BioPlateMatrix._index_row_column("A", "1"),
bpu.EL("W", 1, 1))
self.assertEqual(BioPlateMatrix._index_row_column("D", "10"),
bpu.EL("W", 4, 10))
self.assertEqual(
BioPlateMatrix._index_row_column("D-G", "10"),
bpu.EL("C", slice(4, 8, 1), 10),
)
self.assertEqual(
BioPlateMatrix._index_row_column("G-I", "5-8"),
bpu.EL("R", slice(7, 10, 1), slice(5, 9, 1)),
)
self.assertEqual(BioPlateMatrix._index_row_column("G", "5-8"),
bpu.EL("R", 7, slice(5, 9, 1)))
self.assertEqual(BioPlateMatrix._index_row_column("B-E", "5"),
bpu.EL("C", slice(2, 6, 1), 5))
def test_all_row_column(self):
self.assertEqual(BioPlateMatrix._all_row_column("A"),
bpu.EL("R", 1, slice(1, None)))
self.assertEqual(BioPlateMatrix._all_row_column(3),
bpu.EL("C", slice(1, None), 3))