def loadSequence(self, sequence):
"""load sequence properties from a sequence."""
if len(sequence) % 3:
raise "sequence %s is not multiples of 3: length=%i!" % (
cur_record.title, len(sequence))
SequenceProperties.loadSequence(self, sequence)
# uppercase all letters and count codons
self.mCodonCounts = Genomics.CountCodons(sequence.upper())
def loadSequence(self, sequence, seqtype="na"):
"""load sequence properties from a sequence."""
if len(sequence) % 3:
raise ValueError('''sequence length is not a multiple of 3
(length=%i)''' % (len(sequence)))
SequencePropertiesLength.loadSequence(self, sequence, seqtype)
# uppercase all letters and count codons
self.mCodonCounts = Genomics.CountCodons(sequence.upper())