def ShareTool(self, tool_id, user_name, permissions):
tool = self.GetTool(tool_id)
user = User.objects.get(username=user_name)
Tools.ShareTool(self.user, tool, user, Run=permissions["Run"],
Export=permissions["Export"], Publish=permissions["Publish"],
Edit=permissions["Edit"], Admin=permissions["Admin"]
)
def AddTool(self, tool):
with transaction.atomic():
#create the tool
tool = Tools.AddTool(self.user, tool["ToolName"],
tool["Category"], tool["ToolDescription"], False)
#create the development tool version
toolversion = ToolVersions.AddToolVersion(self.user, tool, "dev",
tool.ToolDescription, "")
self.make_tool_directory(tool.ToolID, toolversion.ToolVersionNum)
return toolversion
def UpdateTool(self, tool_id, version):
tool = self.GetTool(tool_id)
with transaction.atomic():
#update tool details
tool_details = version["Tool"]
tool = Tools.UpdateTool(self.user, tool,
ToolName=tool_details["ToolName"],
CategoryID=tool_details["CategoryID"],
ToolDescription=version["ShortDescription"]
)
#update version details
tool_version = self.GetToolVersion(tool, "dev")
tool_version = ToolVersions.UpdateToolVersion(self.user,
tool_version, version["ShortDescription"],
version["LongDescription"], version["Command"]
)
#update parameters
for i, p in enumerate(version["Parameters"]):
parameter = self.UpdateParameter(p, i)
#update/add expected outputs
for o in version["ExpectedOutputs"]:
if o["ExpectedOutputID"]:
self.UpdateExpectedOutput(o)
else:
self.AddExpectedOutput(tool, o)
#update/add default resources
Resources.UpdateResources(self.user, tool_version,
settings.JMS_SETTINGS["resource_manager"]["name"],
version["Resources"]
)
return tool
def UnshareTool(self, tool_id, user_name):
tool = self.GetTool(tool_id)
user = User.objects.get(username=user_name)
Tools.UnshareTool(self.user, tool, user)
def DeleteToolFile(self, tool_id, filename):
path = os.path.join(self.base_dir, "tools/%s/dev/%s" % (tool_id, filename))
Tools.DeleteFile(self.user, tool_id, path)
def ReadToolFile(self, tool_id, filename):
path = os.path.join(self.base_dir, "tools/%s/dev/%s" % (tool_id, filename))
return Tools.ReadFile(self.user, tool_id, path)
def SaveToolFile(self, tool_id, filename, content):
tool_dir = self.make_tool_directory(int(tool_id), "dev")
path = os.path.join(tool_dir, filename)
Tools.SaveFile(self.user, tool_id, path, content)
def UploadToolFiles(self, tool_id, file_dict):
path = self.make_tool_directory(int(tool_id), "dev")
return Tools.UploadFiles(self.user, tool_id, path, file_dict)
def GetToolFiles(self, tool_id):
path = self.make_tool_directory(int(tool_id), "dev")
return Tools.GetFileList(self.user, tool_id, path)
def AddParameter(self, tool_id, parameter_name, parent_id=None):
tool = Tools.GetTool(self.user, tool_id)
return Parameters.AddParameter(self.user, tool, parameter_name, parent_id)
def UpdateToolAvailability(self, tool_id, publicInd):
tool = self.GetTool(tool_id)
return Tools.UpdateAvailability(self.user, tool, publicInd)
def DeleteTool(self, tool_id):
Tools.DeleteTool(self.user, tool_id)
def GetTool(self, tool_id):
return Tools.GetTool(self.user, tool_id)
def GetTools(self):
tools = Tools.GetTools(self.user)
return tools