def format(pars,logger=None):
my_methods = pars.formatters
infile = pars.inputfile
inputfileroot = infile.split(".")[0]
#Get a list of all directories beneath DPLSim/analysisMethods
allAnalysisMethods,methodNames = DPLSim.analysisMethods.myModList()
#Read in the binary simupop population
inputMethodName= 'DPLSim.analysisMethods.simupop.input'
inputmethod = my_import(inputMethodName)
pop = inputmethod.inRead(infile)
if logger:
logger.info("Loading %s file %s successful!" %(inputMethodName.split('.')[2],infile))
#select the correct parsing method for each analysis method chosen.
filenames = []
for m in my_methods:
if m.upper() in methodNames:
for a in allAnalysisMethods:
if a.name.upper() == m.upper():
if a.hasFormatFunction():
filenames.append(a.formatter.createFiles(pop,inputfileroot))
if logger:
logger.info("Formatting to type %s done!" % a.name)
else:
logger.info("Parsing for method %s not supported!" % m)
return filenames
def getClineFunction(self):
"""
Get the cline function for an analysis method, if available.
Uses the dynamic import function to return the cline function as a variable.
"""
if self.cline:
return my_import("DPLSim.analysisMethods.%s.cline" % self.name.lower())
def getFormatter(self):
"""
Get the formatting function for an analysis method, if available.
Uses the dynamic import function to return the formatter as a variable.
"""
if self.format:
return my_import("DPLSim.analysisMethods.%s.formatter" % self.name.lower())
else:
print "not importing formatter!"