def calc_hamiltonian_pieces(MminL,
                            MmaxL,
                            edge_states,
                            N,
                            lz_val,
                            hamiltonian_labels,
                            params_filename,
                            send_jobs=True):
    params = ParametersAnnulus(params_filename)
    hamiltonian_terms_names = [
        'interactions', 'confining_potential', 'SC_term', 'FM_term'
    ]
    all_matrices_filenames = []
    for i in range(len(hamiltonian_labels)):
        if hamiltonian_labels[i] != 'None':
            while EC.how_many_jobs(
            ) + params.speeding_parameter > params.max_jobs_in_queue_S:
                sleep(100)
                print("too many jobs in queue!")
            args = [
                MminL, MmaxL, edge_states, N, lz_val, hamiltonian_labels[i]
            ]
            matrix_filename = FM.filename_complete_matrix(
                hamiltonian_terms_names[i], args)
            all_matrices_filenames.append(matrix_filename)
            if not EC.does_file_really_exist(matrix_filename) and send_jobs:
                create_matrix_pieces(MminL, MmaxL, edge_states, N, lz_val,
                                     hamiltonian_labels[i],
                                     hamiltonian_terms_names[i],
                                     params_filename)
    return all_matrices_filenames
def send_job_full_spectrum(params_filename,
                           lz_val_middle=None,
                           parameters_external=None):
    params = ParametersAnnulus(params_filename)

    filename_spectrum_eigenstates = FM.filename_spectrum_eigenstates(
        params.MminLaughlin, params.MmaxLaughlin, params.edge_states, params.N,
        params.lz_val, params.hamiltonian_labels, params.h_parameters)
    if EC.does_file_really_exist(filename_spectrum_eigenstates):
        print("file " + filename_spectrum_eigenstates + " already created")
        return 0

    queue = params.managing_job_queue
    mem, vmem = JS.get_mem_vmem_vals(queue, params.managing_job_mem,
                                     params.managing_job_vmem)
    args = [params_filename]
    if lz_val_middle:
        args = args + [lz_val_middle]
    if parameters_external:
        args = args + parameters_external
    # args = args + ['calc_full_spectrum']
    # calculates low lying spectrum
    args = args + ['spectrum_eigenstates_manager']
    jobname = 'full_spectrum_' + params.params_filename_no_path
    jobname = EC.make_job_name_short_again(jobname)
    JS.send_job(scriptNames.multiFile,
                pbs_filename=jobname,
                script_args=args,
                queue=queue,
                mem=mem,
                vmem=vmem)
    return 0
def calc_low_lying_spectrum_from_scratch(params_filename,
                                         magnetic_flux_index='None',
                                         send_jobs=True,
                                         wait=True):
    params = ParametersAnnulus(params_filename)
    if magnetic_flux_index != 'None':
        params.setHamiltonianLabels(magnetic_flux_index)
    create_basis_lists(params.params_full_filename)
    create_two_particle_hamiltonian(params_filename, magnetic_flux_index)

    all_matrices_filenames = AMAS.calc_hamiltonian_pieces(
        params.MminLaughlin, params.MmaxLaughlin, params.edge_states, params.N,
        params.lz_val, params.hamiltonian_labels, params_filename, send_jobs)

    if not wait and not EC.all_files_exist(all_matrices_filenames):
        print("not all matrices written yet, and I'm not a patient woman")
        return 0

    while not EC.all_files_exist(all_matrices_filenames):
        sleep(120)

    # actual calculation of low lying spectrum
    filename_spectrum = FM.filename_spectrum_eigenstates(
        params.MminLaughlin, params.MmaxLaughlin, params.edge_states, params.N,
        params.lz_val, params.hamiltonian_labels, params.h_parameters)
    if EC.does_file_really_exist(filename_spectrum):
        print("we did this spectrum calculation already")
        return filename_spectrum

    queue = params.spectrum_eigenstates_queue
    mem, vmem = JS.get_mem_vmem_vals(queue, params.spectrum_eigenstates_mem,
                                     params.spectrum_eigenstates_vmem)
    args = [params_filename, magnetic_flux_index]
    args = args + ['calc_spectrum_eigenstates_with_flux']
    # jobname = 'spectrum_eigenstates_' + params.params_filename_no_path
    jobname = 'spectrum_eigenstates_magnetic_flux_index=' + str(
        magnetic_flux_index)
    jobname = EC.make_job_name_short_again(jobname)
    JS.send_job(scriptNames.multiFile,
                pbs_filename=jobname,
                script_args=args,
                queue=queue,
                mem=mem,
                vmem=vmem,
                ppn=params.ppn)

    return filename_spectrum
def calc_lz_vals_for_spectrum_from_scratch(params_filename,
                                           lz_val_external=None,
                                           parameters_external=None):
    params = ParametersAnnulus(params_filename)
    if lz_val_external:
        lz_val = lz_val_external
    else:
        lz_val = params.lz_val

    if parameters_external:
        parameters = parameters_external
    else:
        parameters = params.h_parameters

    filename_lz_spectrum = FM.filename_spectrum_lz_total_vals(
        params.MminLaughlin, params.MmaxLaughlin, params.edge_states, params.N,
        params.hamiltonian_labels, parameters)
    if EC.does_file_really_exist(filename_lz_spectrum):
        print("already created " + filename_lz_spectrum)
        return filename_lz_spectrum

    filename_spectrum = calc_low_lying_spectrum_from_scratch(
        params_filename, lz_val_external, parameters_external)
    while not EC.does_file_really_exist(filename_spectrum):
        sleep(60)
    matrix_name = 'total_angular_momentum'
    matrix_label = params.total_ang_momentum_label
    args = [
        params.MminLaughlin, params.MmaxLaughlin, params.edge_states, params.N,
        lz_val, matrix_label
    ]
    AMAS.create_matrix_pieces(params.MminLaughlin, params.MmaxLaughlin,
                              params.edge_states, params.N, lz_val,
                              matrix_label, matrix_name, params_filename)

    filename_lz_matrix = FM.filename_complete_matrix(matrix_name, args)
    while not EC.does_file_really_exist(filename_lz_matrix):
        sleep(60)

    queue = params.lz_spectrum_queue
    mem, vmem = JS.get_mem_vmem_vals(queue, params.lz_spectrum_mem,
                                     params.lz_spectrum_vmem)
    args = [params_filename]
    if lz_val_external:
        args = args + [lz_val_external]
    if parameters_external:
        args = args + parameters_external
    args = args + ['spectrum_lz_calc']
    jobname = 'calc_lz_spectrum_' + '_'.join([str(a) for a in args])
    jobname = EC.make_job_name_short_again(jobname)
    JS.send_job(scriptNames.multiFile,
                pbs_filename=jobname,
                script_args=args,
                queue=queue,
                mem=mem,
                vmem=vmem)

    return filename_lz_spectrum
def calc_lz_spectrum_wrap_job(params_filename,
                              lz_val_external=None,
                              parameters_external=None,
                              magnetic_flux_index=0):
    params = ParametersAnnulus(params_filename)
    if lz_val_external:
        lz_val = lz_val_external
    else:
        lz_val = params.lz_val

    if parameters_external:
        parameters = parameters_external
    else:
        parameters = params.h_parameters

    if params.is_magnetic_flux:
        params.setHamiltonianLabels(magnetic_flux_index)
    filename_lz_spectrum = FM.filename_spectrum_lz_total_vals(
        params.MminLaughlin, params.MmaxLaughlin, params.edge_states, params.N,
        params.hamiltonian_labels, parameters)
    if EC.does_file_really_exist(filename_lz_spectrum):
        print("already created " + filename_lz_spectrum)
        return 0
    queue = params.lz_spectrum_manager_queue
    mem, vmem = JS.get_mem_vmem_vals(queue, params.lz_spectrum_manager_mem,
                                     params.lz_spectrum_manager_vmem)
    args = [params_filename]
    if lz_val_external:
        args = args + [lz_val_external]
    if parameters_external:
        args = args + parameters_external
    args = args + ['spectrum_lz_vals_manager']
    jobname = 'lz_spectrum_manager_params_file' + params.params_filename_no_path
    jobname = EC.make_job_name_short_again(jobname)
    JS.send_job(scriptNames.multiFile,
                pbs_filename=jobname,
                script_args=args,
                queue=queue,
                mem=mem,
                vmem=vmem)
    return 0
def calc_luttinger_parameter_from_full_spectrum(params_filename,
                                                lz_center_val):
    params = ParametersAnnulus(params_filename)
    window_of_lz = 'all'
    filename_full_spectrum = FM.filename_full_spectrum(
        params.MminLaughlin, params.MmaxLaughlin, params.edge_states, params.N,
        window_of_lz, params.hamiltonian_labels, params.h_parameters)
    if EC.does_file_really_exist(filename_full_spectrum):
        full_spectrum = FM.read_full_spectrum(params.MminLaughlin,
                                              params.MmaxLaughlin,
                                              params.edge_states, params.N,
                                              window_of_lz,
                                              params.hamiltonian_labels,
                                              params.h_parameters)
    else:
        full_spectrum = calc_full_low_lying_spectrum(
            params.MminLaughlin, params.MmaxLaughlin, params.edge_states,
            params.N, lz_center_val, params.hamiltonian_labels,
            params.h_parameters, window_of_lz, params_filename)

    first_arc_lz = np.array([lz_center_val + i for i in range(params.N)])
    first_arc_energy = np.array([full_spectrum[lz][0] for lz in first_arc_lz])
    omega_s = extract_omega_s_from_first_arc(first_arc_lz, first_arc_energy)

    umbrella_lz = np.array([
        lz_center_val - params.N * params.edge_states + params.N * i
        for i in range(2 * params.edge_states + 1)
    ])
    umbrella_energy = np.array([full_spectrum[lz][0] for lz in umbrella_lz])
    umbrella_J = np.array([
        2 * excitation
        for excitation in range(-params.edge_states, params.edge_states + 1)
    ])

    omega_J = extract_omega_J_from_umbrella_J(umbrella_J, umbrella_lz,
                                              umbrella_energy)

    omega2 = (full_spectrum[lz_center_val + 1][0] -
              full_spectrum[lz_center_val][0]) / 2 + (full_spectrum[
                  lz_center_val - 1][0] - full_spectrum[lz_center_val][0]) / 2
    g2 = omega_J / omega2

    g = omega_J / omega_s
    print("***********")
    print("g calculation = " + str(g))
    print("linear approximation for g = " + str(g2))
    return g
def estimate_confining_potential_energy(params_filename):
    params = ParametersAnnulus(params_filename)
    Mmin = params.MminLaughlin - params.edge_states
    Mmax = params.MmaxLaughlin + params.edge_states
    confining_potential_single = SPA.create_confining_potential(
        Mmin, Mmax, params.MminLaughlin, params.MmaxLaughlin,
        params.confining_potential_name)
    Laughlin_state_conf_vals = [
        confining_potential_single[k, k] for k in range(
            params.edge_states, params.MmaxLaughlin - params.MminLaughlin +
            params.edge_states)
    ]
    Laughlin_state_energy = sum(Laughlin_state_conf_vals) / 3
    edge_excitations = confining_potential_single[0, 0] * params.N
    total_confining_potential_energy = Laughlin_state_energy + edge_excitations
    total_confining_potential_energy = total_confining_potential_energy * params.confining_potential_parameter
    return total_confining_potential_energy
def calc_density_profile(params_filename):
    params = ParametersAnnulus(params_filename)
    args = [params_filename, 'calc_density_profile']
    job_name = 'density_profile_N=' + str(params.N) + '_MminL=' + str(
        params.MminLaughlin) + '_MmaxL=' + str(
            params.MmaxLaughlin) + '_edges=' + str(params.edge_states)
    job_name = EC.make_job_name_short_again(job_name)
    queue = params.managing_job_queue
    mem, vmem = JS.get_mem_vmem_vals(queue, params.managing_job_mem,
                                     params.managing_job_vmem)
    JS.send_job(scriptNames.multiFile,
                pbs_filename=job_name,
                script_args=args,
                queue=queue,
                mem=mem,
                vmem=vmem)
    return
def create_two_particle_hamiltonian(params_filename, magnetic_flux_index=None):
    params = ParametersAnnulus(params_filename)
    queue = params.two_particle_queue
    mem = params.two_particle_mem
    vmem = params.two_particle_vmem
    mem, vmem = JS.get_mem_vmem_vals(queue, mem, vmem)
    Mmin = params.MminLaughlin - params.edge_states
    Mmax = params.MmaxLaughlin + params.edge_states
    if magnetic_flux_index != None:
        magnetic_flux = params.flux_range[magnetic_flux_index]
        two_particle_ham_filename = FM.filename_two_particle_matrices(
            Mmin, Mmax, params.potential_type + '_' + str(magnetic_flux))
    else:
        two_particle_ham_filename = FM.filename_two_particle_matrices(
            Mmin, Mmax, params.potential_type)

    if EC.does_file_really_exist(two_particle_ham_filename):
        print("2-particle hamiltonian already exists")

    else:
        print("creating 2-particle hamiltonian")
        if magnetic_flux_index != None:
            args = [
                params.params_full_filename, magnetic_flux,
                'two_particle_hamiltonian'
            ]
        else:
            args = [params.params_full_filename, 'two_particle_hamiltonian']
        pbs_filename = '2_particle_ham_Mmin=' + str(Mmin) + '_Mmax=' + str(
            Mmax) + '_potential_type=' + params.potential_type
        pbs_filename = EC.make_job_name_short_again(pbs_filename)
        JS.send_job(scriptNames.multiFile,
                    pbs_filename=pbs_filename,
                    script_args=args,
                    queue=queue,
                    mem=mem,
                    vmem=vmem)

        two_particle_ham_filename = FM.filename_two_particle_matrices(
            Mmin, Mmax, params.potential_type)
        while not EC.does_file_really_exist(two_particle_ham_filename):
            sleep(20)
        print("done writing two-particle hamiltonian")
def create_basis_lists(params_filename, lz_val_external=None):
    params = ParametersAnnulus(params_filename)
    queue = params.basis_list_queue
    mem, vmem = JS.get_mem_vmem_vals(params.basis_list_queue,
                                     params.basis_list_mem,
                                     params.basis_list_vmem)

    Mmin = params.MminLaughlin - params.edge_states
    Mmax = params.MmaxLaughlin + params.edge_states
    if lz_val_external:
        lz_val = lz_val_external
    else:
        lz_val = params.lz_val
    if lz_val == 'not_fixed':
        # basis_filename = FM.filename_basis_annulus(Mmin, Mmax, params.N)
        basis_filename = FM.filename_basis_annulus(0, Mmax - Mmin, params.N)
    else:
        basis_filename = FM.filename_basis_annulus_const_lz(
            0, Mmax - Mmin, params.N, lz_val - params.N * Mmin)
    if not EC.does_file_really_exist(basis_filename):
        print("writing basis lists")
        if lz_val_external:
            args = [
                params.params_full_filename, lz_val, 'create_all_basis_lists'
            ]
        else:
            args = [params.params_full_filename, 'create_all_basis_lists']
        # filename = 'create_basis_' + params.params_filename_no_path
        filename = 'create_basis_Mmin=' + str(Mmin) + '_Mmax=' + str(
            Mmax) + '_N=' + params.N
        JS.send_job(scriptNames.multiFile,
                    pbs_filename=filename,
                    script_args=args,
                    queue=queue,
                    mem=mem,
                    vmem=vmem)

        while not EC.does_file_really_exist(basis_filename):
            sleep(60)
        print("done writing basis")
    else:
        print("basis already written")
    return 0
def get_low_lying_spectrum(MminL,
                           MmaxL,
                           edge_states,
                           N,
                           lz_val,
                           hamiltonian_labels,
                           parameters,
                           params_filename,
                           run_on_cluster=1):
    params = ParametersAnnulus(params_filename)
    if lz_val != 'not_fixed':
        lz_val = int(float(lz_val))
    filename_spectrum = FM.filename_spectrum_eigenstates(
        MminL, MmaxL, edge_states, N, lz_val, hamiltonian_labels, parameters)
    if EC.does_file_really_exist(filename_spectrum):
        spectrum = FM.read_spectrum_eigenstates(MminL, MmaxL, edge_states, N,
                                                lz_val, hamiltonian_labels,
                                                parameters)
        size_hilbert_space = GA.size_of_hilbert_space(MminL - edge_states,
                                                      MmaxL + edge_states, N,
                                                      lz_val)
        if len(
                spectrum
        ) >= params.num_of_eigstates or size_hilbert_space <= params.num_of_eigstates:
            return spectrum

    hamiltonian = extract_Hamiltonian(MminL, MmaxL, edge_states, N, lz_val,
                                      hamiltonian_labels, parameters,
                                      run_on_cluster)
    spectrum = calc_eigenVals_Vecs(hamiltonian, params.num_of_eigstates)
    if params.eigenstates_cutoff:
        print("eigenstates_cutoff")
        eig_spectrum_new1 = spectrum[:params.eigenstates_cutoff]

        eig_spectrum_new2 = [
            (spectrum[i][0], [])
            for i in range(params.eigenstates_cutoff, len(spectrum))
        ]
        spectrum = eig_spectrum_new1 + eig_spectrum_new2
    FM.write_spectrum_eigenstates(MminL, MmaxL, edge_states, N, lz_val,
                                  hamiltonian_labels, parameters, spectrum)
    return spectrum
def create_density_profile(params_filename, plot_graph=0):
    params = ParametersAnnulus(params_filename)
    filename_density = FM.filename_density_profile_groundstate(
        params.MminLaughlin, params.MmaxLaughlin, params.edge_states, params.N,
        params.hamiltonian_labels, params.h_parameters,
        params.num_measurement_points)
    if EC.does_file_really_exist(filename_density):
        print("file for density already exists")
        if plot_graph:
            rs, density_observable = graphData.plot_graph_from_file(
                filename_density)
            return rs, density_observable
        rs, density_observable = graphData.read_graph_data_from_file(
            filename_density)
        return rs, density_observable

    spec_states = get_low_lying_spectrum(
        params.MminLaughlin, params.MmaxLaughlin, params.edge_states, params.N,
        params.lz_laughlin, params.hamiltonian_labels, params.h_parameters,
        params_filename, 0)
    gs = spec_states[0][1]
    rmin = (2 * (params.MminLaughlin - params.edge_states))**0.5
    rmax = (2 * (params.MmaxLaughlin + params.edge_states))**0.5

    rs = np.linspace(rmin, rmax, params.num_measurement_points)

    density_observable = np.zeros(params.num_measurement_points)
    for i in range(params.num_measurement_points):
        density_operator = extract_complete_matrix(params.MminLaughlin,
                                                   params.MmaxLaughlin,
                                                   params.edge_states,
                                                   params.N,
                                                   int(params.lz_laughlin),
                                                   rs[i], 'density', 0)
        density_observable[i] = abs(
            np.transpose(gs).conjugate() @ density_operator @ gs)

    graphData.write_graph_data_to_file(filename_density, rs,
                                       density_observable,
                                       'Radial density vs. radial distance')
    return rs, density_observable
def unite_and_write_full_matrix(MminL, MmaxL, edge_states, N, lz_val,
                                matrix_label, matrix_name, params_filename):
    params = ParametersAnnulus(params_filename)
    queue = params.write_unite_matrix_queue
    mem, vmem = JS.get_mem_vmem_vals(queue, params.write_unite_matrix_mem,
                                     params.write_unite_matrix_vmem)
    args = [MminL, MmaxL, edge_states, N, lz_val, matrix_label]
    filename_complete_matrix = FM.filename_complete_matrix(matrix_name, args)
    if EC.does_file_really_exist(filename_complete_matrix):
        print("matrix already written")
        return 0

    args = [matrix_name, MminL, MmaxL, edge_states, N, lz_val, matrix_label]
    filename = 'writing_matrix_' + "_".join([str(a) for a in args])
    filename = EC.make_job_name_short_again(filename)
    JS.send_job(scriptNames.uniteMatrixPieces,
                queue=queue,
                mem=mem,
                vmem=vmem,
                pbs_filename=filename,
                script_args=args)
    return 0
def calc_luttinger_parameter(params_filename):
    params = ParametersAnnulus(params_filename)
    args = [params_filename, 'calc_luttinger_parameter']

    filename_luttinger = FM.filename_spectrum_luttinger_parm(
        params.MminLaughlin, params.MmaxLaughlin, params.edge_states, params.N,
        'all', params.hamiltonian_labels, params.h_parameters)
    if EC.does_file_really_exist(filename_luttinger):
        print("we did this luttinger spectrum already")
        return

    job_name = 'lutt_p_N=' + str(params.N) + '_MminL=' + str(
        params.MminLaughlin) + '_MmaxL=' + str(
            params.MmaxLaughlin) + '_edges=' + str(params.edge_states)
    job_name = EC.make_job_name_short_again(job_name)
    queue = params.luttinger_parm_queue
    mem, vmem = JS.get_mem_vmem_vals(queue, params.luttinger_parm_mem,
                                     params.luttinger_parm_vmem)
    JS.send_job(scriptNames.multiFile,
                pbs_filename=job_name,
                script_args=args,
                queue=queue,
                mem=mem,
                vmem=vmem)
Beispiel #15
0
matrix_name = sys.argv[1]
MminL = int(sys.argv[2])
MmaxL = int(sys.argv[3])
edge_states = int(sys.argv[4])
N = int(sys.argv[5])
lz_val = sys.argv[6]
matrix_label = sys.argv[7]
slice_start = int(sys.argv[8])
slice_end = int(sys.argv[9])
speeding_parameter = int(sys.argv[10])
params_filename = sys.argv[11]

Mmin = MminL - edge_states
Mmax = MmaxL + edge_states
params = ParametersAnnulus(params_filename)

JS.limit_num_threads()
if params.matrix_pieces_queue == 'P' or params.matrix_pieces_queue == 'M':
    JS.limit_num_threads(4)

"""
matrix_name in [interactions,FM_term,confining_potential,edge_correlation,density]
"""

if lz_val == 'not_fixed':
    basis_list = GA.create_basis_annulus(Mmin, Mmax, N)
else:
    lz_val = int(float(lz_val))
    basis_list = GA.create_basis_annulus_const_lz(Mmin, Mmax, N, lz_val)
def calc_full_low_lying_spectrum(params_filename,
                                 send_jobs=True,
                                 wait=False,
                                 lz_val_middle=None,
                                 parameters_external=None,
                                 window_of_lz='all'):
    params = ParametersAnnulus(params_filename)
    if not lz_val_middle:
        lz_val = params.lz_laughlin
    else:
        lz_val = lz_val_middle
    if parameters_external:
        parameters = parameters_external
    else:
        parameters = params.h_parameters

    filename_full_spectrum = FM.filename_full_spectrum(
        params.MminLaughlin, params.MmaxLaughlin, params.edge_states, params.N,
        window_of_lz, params.hamiltonian_labels, parameters)
    if EC.does_file_really_exist(filename_full_spectrum):
        full_spectrum = graphData.plot_spectrum_graph_data_from_file(
            filename_full_spectrum)
        return full_spectrum

    queue = params.spectrum_job_manager_queue
    mem, vmem = JS.get_mem_vmem_vals(queue, params.spectrum_job_manager_mem,
                                     params.spectrum_job_manager_vmem)
    Mmin = params.MminLaughlin - params.edge_states
    Mmax = params.MmaxLaughlin + params.edge_states

    lz_total_vals = LCA.find_all_lz_total_values(Mmin, Mmax, params.N)
    if window_of_lz == 'all':
        lz_min = lz_total_vals[0]
        lz_max = lz_total_vals[-1]

    else:
        lz_min = max(lz_val - window_of_lz, lz_total_vals[0])
        lz_max = min(lz_val + window_of_lz, lz_total_vals[-1])

    all_file_names = []
    for lz in range(lz_min, lz_max + 1):
        filename_lz_spectrum = FM.filename_spectrum_eigenstates(
            params.MminLaughlin, params.MmaxLaughlin, params.edge_states,
            params.N, lz, params.hamiltonian_labels, parameters)
        if EC.does_file_really_exist(filename_lz_spectrum):
            spectrum = FM.read_spectrum_eigenstates(
                params.MminLaughlin, params.MmaxLaughlin, params.edge_states,
                params.N, lz, params.hamiltonian_labels, parameters)
            size_hilbert_space = GA.size_of_hilbert_space(
                Mmin, Mmax, params.N, lz_val)
            if len(
                    spectrum
            ) >= params.num_of_eigstates or size_hilbert_space <= params.num_of_eigstates:
                print("we did this lz spectrum calculation already!")
            else:
                if send_jobs:
                    sleep(2)
                    print("finding the spectrum")
                    args = [params_filename, lz]
                    if parameters_external:
                        args = args + parameters_external
                    args = args + ['spectrum_eigenstates_manager']
                    # job_name = 'spectrum_job_manager_' + params.params_filename_no_path
                    job_name = 'full_spectrum_N=' + str(
                        params.N) + '_MminL=' + str(
                            params.MminLaughlin) + '_MmaxL=' + str(
                                params.MmaxLaughlin) + '_edges=' + str(
                                    params.edge_states)
                    job_name = EC.make_job_name_short_again(job_name)
                    JS.send_job(scriptNames.multiFile,
                                pbs_filename=job_name,
                                script_args=args,
                                queue=queue,
                                mem=mem,
                                vmem=vmem)

                all_file_names.append(filename_lz_spectrum)

        else:
            if send_jobs:
                sleep(2)
                print("finding the spectrum")
                args = [params_filename, lz]
                if parameters_external:
                    args = args + parameters_external
                args = args + ['spectrum_eigenstates_manager']
                # job_name = 'spectrum_job_manager_' + params.params_filename_no_path
                job_name = 'full_spectrum_N=' + str(
                    params.N) + '_MminL=' + str(
                        params.MminLaughlin) + '_MmaxL=' + str(
                            params.MmaxLaughlin) + '_edges=' + str(
                                params.edge_states)
                job_name = EC.make_job_name_short_again(job_name)
                JS.send_job(scriptNames.multiFile,
                            pbs_filename=job_name,
                            script_args=args,
                            queue=queue,
                            mem=mem,
                            vmem=vmem)

            all_file_names.append(filename_lz_spectrum)

    while not EC.all_files_exist(all_file_names):
        if not wait:
            print("not done creating spectrum!")
            return
        sleep(100)

    full_spectrum = {}
    print(range(lz_min, lz_max + 1))
    for lz in range(lz_min, lz_max + 1):
        spec_states = FM.read_spectrum_eigenstates(
            params.MminLaughlin, params.MmaxLaughlin, params.edge_states,
            params.N, lz, params.hamiltonian_labels, parameters)
        spectrum = np.array(
            [spec_states[i][0] for i in range(len(spec_states))])
        print("***************")
        print(spectrum)
        full_spectrum[lz] = spectrum

    title = 'low lying spectrum of system with N=' + str(
        params.N) + ' MminL=' + str(params.MminLaughlin) + ' MmaxL=' + str(
            params.MmaxLaughlin) + '\nham_lbls: ' + ' '.join(
                params.hamiltonian_labels) + '\nLz laughlin at ' + str(
                    params.lz_laughlin)
    xlabel = 'Lz total'
    ylabel = 'Energy'
    graphData.write_spectrum_data_to_file(filename_full_spectrum,
                                          full_spectrum, title, xlabel, ylabel)

    return full_spectrum
def calc_luttinger_parameter_from_scratch(params_filename,
                                          lz_center_val,
                                          plot_graphs_to_check=True,
                                          do_spectrum_calculation=True,
                                          cutoff_edges=False):
    params = ParametersAnnulus(params_filename)
    window_of_lz = 'all'
    filename_full_spectrum = FM.filename_spectrum_luttinger_parm(
        params.MminLaughlin, params.MmaxLaughlin, params.edge_states, params.N,
        window_of_lz, params.hamiltonian_labels, params.h_parameters)

    first_arc_lz = np.array([lz_center_val + i for i in range(params.N)])
    umbrella_lz = np.array([
        lz_center_val - params.N * params.edge_states + params.N * i
        for i in range(2 * params.edge_states + 1)
    ])

    if EC.does_file_really_exist(filename_full_spectrum):
        full_spectrum = FM.read_spectrum_luttinger_parm(
            params.MminLaughlin, params.MmaxLaughlin, params.edge_states,
            params.N, window_of_lz, params.hamiltonian_labels,
            params.h_parameters)
    else:
        if not do_spectrum_calculation:
            return 0
        full_spectrum = {}

        lz_vals_to_add_spectrum = np.concatenate((first_arc_lz, umbrella_lz))
        for lz_val in lz_vals_to_add_spectrum:
            spectrum_lz = get_low_lying_spectrum(
                params.MminLaughlin, params.MmaxLaughlin, params.edge_states,
                params.N, lz_val, params.hamiltonian_labels,
                params.h_parameters, params_filename, 0)
            full_spectrum[lz_val] = [
                spectrum_lz[i][0] for i in range(len(spectrum_lz))
            ]

        graphData.write_spectrum_data_to_file(filename_full_spectrum,
                                              full_spectrum,
                                              'luttinger partial spectrum',
                                              'Total angular momentum',
                                              'Energy')

    first_arc_energy = np.array([full_spectrum[lz][0] for lz in first_arc_lz])
    omega_s = extract_omega_s_from_first_arc(first_arc_lz, first_arc_energy,
                                             plot_graphs_to_check)
    #
    umbrella_energy = np.array([full_spectrum[lz][0] for lz in umbrella_lz])
    umbrella_J = np.array([
        2 * excitation
        for excitation in range(-params.edge_states, params.edge_states + 1)
    ])

    if cutoff_edges:
        # edges = min(params.edge_states, 4)
        dif = params.edge_states - 4
        if dif > 0:
            umbrella_J = umbrella_J[dif:-dif]
            umbrella_lz = umbrella_lz[dif:-dif]
            umbrella_energy = umbrella_energy[dif:-dif]

    if params.N == 7 and params.edge_states == 4:
        umbrella_J = umbrella_J[:-1]
        umbrella_lz = umbrella_lz[:-1]
        umbrella_energy = umbrella_energy[:-1]

    omega_J = extract_omega_J_from_umbrella_J(umbrella_J, umbrella_lz,
                                              umbrella_energy,
                                              plot_graphs_to_check)

    omega2 = (full_spectrum[lz_center_val + 1][0] -
              full_spectrum[lz_center_val][0])

    g2 = omega_J / omega2

    g = omega_J / omega_s
    # print("***********")
    # print("g calculation = " + str(g))
    # print("linear approximation for g = " + str(g2))
    return g
def calc_full_spectrum_magnetic_flux_range(params_filename,
                                           wait=True,
                                           send_jobs=True,
                                           batch_size=None):
    params = ParametersAnnulus(params_filename)
    flux_range_size = len(params.flux_range)

    params.setHamiltonianLabels()
    filename_spectrum_vs_flux_range = FM.filename_spectrum_vs_magnetic_flux(
        params.MminLaughlin, params.MmaxLaughlin, params.edge_states, params.N,
        params.hamiltonian_labels, params.h_parameters)
    if EC.does_file_really_exist(filename_spectrum_vs_flux_range):
        spectrum = graphData.plot_spectrum_graph_data_from_file(
            filename_spectrum_vs_flux_range)
        print("file created!")

        return spectrum

    all_filename_to_create = []
    if batch_size:
        min_index = 0
        max_index = 0
        count = 0
    for index in range(flux_range_size):
        params.setHamiltonianLabels(index)
        filename_spectrum_flux = FM.filename_spectrum_eigenstates(
            params.MminLaughlin, params.MmaxLaughlin, params.edge_states,
            params.N, params.lz_val, params.hamiltonian_labels,
            params.h_parameters)
        # print(filename_spectrum_flux)
        if EC.does_file_really_exist(filename_spectrum_flux):
            # print("we did this calculation already")
            a = 1
        else:
            if send_jobs:
                if not batch_size:
                    sleep(2)
                    print("finding the spectrum for flux index=" + str(index))
                    args = [params_filename, index]
                    args = args + ['spectrum_eigenstates_manager']
                    job_name = 'spectrum_job_manager_' + "magnetic_flux_index=" + str(
                        index) + "_FM_parameter=" + str(params.FM_parameter)
                    job_name = EC.make_job_name_short_again(job_name)
                    queue = params.spectrum_job_manager_queue
                    mem, vmem = JS.get_mem_vmem_vals(
                        queue, params.spectrum_job_manager_mem,
                        params.spectrum_job_manager_vmem)
                    JS.send_job(scriptNames.multiFile,
                                pbs_filename=job_name,
                                script_args=args,
                                queue=queue,
                                mem=mem,
                                vmem=vmem,
                                ppn=params.ppn)
                else:
                    count = count + 1
                    max_index = index
                    if count == 1:
                        min_index = index
                        if index == (flux_range_size - 1):
                            # max_index = index
                            sleep(2)
                            print("sending a batch with FM=" +
                                  str(params.FM_parameter) +
                                  " and max_index=" + str(max_index))
                            args = [params_filename, min_index, max_index]
                            args = args + ['spectrum_eigenstates_batch']
                            job_name = 'flux_spectrum_batch_' + "min_flux_index=" + str(
                                min_index) + "_FM_parameter=" + str(
                                    params.FM_parameter)
                            job_name = EC.make_job_name_short_again(job_name)
                            queue = params.spectrum_job_manager_queue
                            mem, vmem = JS.get_mem_vmem_vals(
                                queue, params.spectrum_job_manager_mem,
                                params.spectrum_job_manager_vmem)
                            JS.send_job(scriptNames.multiFile,
                                        pbs_filename=job_name,
                                        script_args=args,
                                        queue=queue,
                                        mem=mem,
                                        vmem=vmem)
                    elif count == batch_size or index == (flux_range_size - 1):
                        # max_index = index
                        sleep(2)
                        print("sending a batch with FM=" +
                              str(params.FM_parameter) + " and max_index=" +
                              str(max_index))
                        args = [params_filename, min_index, max_index]
                        args = args + ['spectrum_eigenstates_batch']
                        job_name = 'flux_spectrum_batch_' + "min_flux_index=" + str(
                            min_index) + "_FM_parameter=" + str(
                                params.FM_parameter)
                        job_name = EC.make_job_name_short_again(job_name)
                        queue = params.spectrum_job_manager_queue
                        mem, vmem = JS.get_mem_vmem_vals(
                            queue, params.spectrum_job_manager_mem,
                            params.spectrum_job_manager_vmem)
                        JS.send_job(scriptNames.multiFile,
                                    pbs_filename=job_name,
                                    script_args=args,
                                    queue=queue,
                                    mem=mem,
                                    vmem=vmem)
                        count = 0

            all_filename_to_create.append(filename_spectrum_flux)
    if batch_size and count > 0:
        sleep(2)
        print("sending a batch with FM=" + str(params.FM_parameter) +
              " and max_index=" + str(max_index))
        args = [params_filename, min_index, max_index]
        args = args + ['spectrum_eigenstates_batch']
        job_name = 'flux_spectrum_batch_' + "min_flux_index=" + str(
            min_index) + "_FM_parameter=" + str(params.FM_parameter)
        job_name = EC.make_job_name_short_again(job_name)
        queue = params.spectrum_job_manager_queue
        mem, vmem = JS.get_mem_vmem_vals(queue,
                                         params.spectrum_job_manager_mem,
                                         params.spectrum_job_manager_vmem)
        JS.send_job(scriptNames.multiFile,
                    pbs_filename=job_name,
                    script_args=args,
                    queue=queue,
                    mem=mem,
                    vmem=vmem)

    while not EC.all_files_exist(all_filename_to_create):
        if not wait:
            print("still must create #" + str(len(all_filename_to_create)) +
                  " files")
            return
        sleep(100)

    full_spectrum = {}

    print("writing spectrum into file " + filename_spectrum_vs_flux_range)
    for index in range(flux_range_size):
        # print(index)
        # print(params.potential_type)
        params.setHamiltonianLabels(index)
        # print(params.hamiltonian_labels)
        spec_states = FM.read_spectrum_eigenstates(params.MminLaughlin,
                                                   params.MmaxLaughlin,
                                                   params.edge_states,
                                                   params.N, params.lz_val,
                                                   params.hamiltonian_labels,
                                                   params.h_parameters)
        spectrum = np.array(
            [spec_states[i][0] for i in range(len(spec_states))])
        # print("***************")
        # print(spectrum)
        full_spectrum[params.flux_range[index]] = spectrum

    title = 'spectrum vs. magnetic flux of system with N=' + str(
        params.N) + ' MminL=' + str(params.MminLaughlin) + ' MmaxL=' + str(
            params.MmaxLaughlin) + '\nham_lbls: ' + ' '.join(
                params.hamiltonian_labels) + '\nLz laughlin at ' + str(
                    params.lz_laughlin)
    xlabel = 'Magnetic flux'
    ylabel = 'Energy'

    graphData.write_spectrum_data_to_file(filename_spectrum_vs_flux_range,
                                          full_spectrum, title, xlabel, ylabel)

    return full_spectrum
def create_matrix_pieces(MminL, MmaxL, edge_states, N, lz_val, matrix_label,
                         matrix_name, params_filename):
    params = ParametersAnnulus(params_filename)
    common_args = [MminL, MmaxL, edge_states, N, lz_val, matrix_label]

    filename_complete_matrix = FM.filename_complete_matrix(
        matrix_name, common_args)
    if EC.does_file_really_exist(filename_complete_matrix):
        print("already created " + filename_complete_matrix)
        return 0

    queue = params.matrix_pieces_queue
    mem, vmem = JS.get_mem_vmem_vals(queue, params.matrix_pieces_mem,
                                     params.matrix_pieces_vmem)

    Mmin = MminL - edge_states
    Mmax = MmaxL + edge_states
    hilbert_space_size = GA.size_of_hilbert_space(Mmin, Mmax, N, lz_val)
    if hilbert_space_size < 10000:
        args = [matrix_name] + common_args
        str_args = [str(a) for a in args]
        str_args = '-'.join(str_args)
        filename_job = str_args
        JS.send_job(scriptNames.fullMBMatrix,
                    queue,
                    mem=mem,
                    vmem=vmem,
                    script_args=args,
                    pbs_filename=filename_job)
        return 0

    slice_size = int(hilbert_space_size / params.speeding_parameter)
    last_slice_size = hilbert_space_size - params.speeding_parameter * slice_size

    slice_start = 0
    slice_end = slice_size
    count_num_jobs_sent = 0
    for i in range(params.speeding_parameter):
        filename_args = [MminL, MmaxL, edge_states, N, lz_val, matrix_label]
        filename_martix_piece = FM.filename_matrix_piece(
            matrix_name, filename_args, [slice_start, slice_end - 1])
        if EC.does_file_really_exist(filename_martix_piece):
            print("matrix piece " + filename_martix_piece + " already exists!")
        else:
            count_num_jobs_sent = count_num_jobs_sent + 1
            args = [matrix_name] + common_args + [slice_start, slice_end] + [
                params.speeding_parameter, params_filename
            ]
            str_args = [str(a) for a in args]
            str_args = '-'.join(str_args[:-1])
            filename_job = str_args
            JS.send_job(scriptNames.piecesMBMatrix,
                        queue,
                        mem=mem,
                        vmem=vmem,
                        script_args=args,
                        pbs_filename=filename_job)
            sleep(2)
        slice_start = slice_start + slice_size
        slice_end = slice_end + slice_size
    # taking care of last slice
    if last_slice_size > 0:
        slice_end = slice_start + last_slice_size
        filename_args = [MminL, MmaxL, edge_states, N, lz_val, matrix_label]
        filename_martix_piece = FM.filename_matrix_piece(
            matrix_name, filename_args, [slice_start, slice_end - 1])
        if EC.does_file_really_exist(filename_martix_piece):
            print("matrix piece " + filename_martix_piece + " already exists!")
        else:
            count_num_jobs_sent = count_num_jobs_sent + 1
            args = [matrix_name] + common_args + [slice_start, slice_end] + [
                params.speeding_parameter, params_filename
            ]
            str_args = [str(a) for a in args]
            str_args = '-'.join(str_args[:-1])
            filename = str_args
            JS.send_job(scriptNames.piecesMBMatrix,
                        queue,
                        mem=mem,
                        vmem=vmem,
                        script_args=args,
                        pbs_filename=filename)

    if count_num_jobs_sent == 0:
        AMASW.unite_and_write_full_matrix(MminL, MmaxL, edge_states, N, lz_val,
                                          matrix_label, matrix_name,
                                          params_filename)
    return 0
def calc_luttinger_spectrum_big(params_filename, send_jobs=True, wait=False):
    params = ParametersAnnulus(params_filename)
    window_of_lz = 'all'

    filename_luttinger_spectrum = FM.filename_spectrum_luttinger_parm(
        params.MminLaughlin, params.MmaxLaughlin, params.edge_states, params.N,
        window_of_lz, params.hamiltonian_labels, params.h_parameters)
    if EC.does_file_really_exist(filename_luttinger_spectrum):
        print("full lut spectrum created already!")
        full_spectrum = graphData.plot_spectrum_graph_data_from_file(
            filename_luttinger_spectrum)
        return full_spectrum

    queue = params.spectrum_job_manager_queue
    mem, vmem = JS.get_mem_vmem_vals(queue, params.spectrum_job_manager_mem,
                                     params.spectrum_job_manager_vmem)
    Mmin = params.MminLaughlin - params.edge_states
    Mmax = params.MmaxLaughlin + params.edge_states

    first_arc_lz = np.array([params.lz_laughlin + i for i in range(params.N)])
    umbrella_lz = np.array([
        params.lz_laughlin - params.N * params.edge_states + params.N * i
        for i in range(2 * params.edge_states + 1)
    ])

    lz_vals_to_add_spectrum = np.concatenate((first_arc_lz, umbrella_lz))

    all_file_names = []
    for lz in lz_vals_to_add_spectrum:
        lz = int(lz)
        filename_lz_spectrum = FM.filename_spectrum_eigenstates(
            params.MminLaughlin, params.MmaxLaughlin, params.edge_states,
            params.N, lz, params.hamiltonian_labels, params.h_parameters)
        if EC.does_file_really_exist(filename_lz_spectrum):
            spectrum = FM.read_spectrum_eigenstates(
                params.MminLaughlin, params.MmaxLaughlin, params.edge_states,
                params.N, lz, params.hamiltonian_labels, params.h_parameters)
            size_hilbert_space = GA.size_of_hilbert_space(
                Mmin, Mmax, params.N, lz)
            if len(
                    spectrum
            ) >= params.num_of_eigstates or size_hilbert_space <= params.num_of_eigstates:
                # print("we did this lz spectrum calculation already!")
                a = "do nothing"
            else:
                if send_jobs:
                    sleep(2)
                    print("finding the spectrum")
                    args = [params_filename, lz]
                    args = args + ['spectrum_eigenstates_manager']
                    # job_name = 'spectrum_job_manager_' + params.params_filename_no_path
                    job_name = 'lut_spectrum_N=' + str(
                        params.N) + '_MminL=' + str(
                            params.MminLaughlin) + '_edges=' + str(
                                params.edge_states) + '_lz=' + str(lz)
                    job_name = EC.make_job_name_short_again(job_name)
                    JS.send_job(scriptNames.multiFile,
                                pbs_filename=job_name,
                                script_args=args,
                                queue=queue,
                                mem=mem,
                                vmem=vmem)

                all_file_names.append(filename_lz_spectrum)

        else:
            if send_jobs:
                sleep(2)
                print("finding the spectrum")
                args = [params_filename, lz]
                args = args + ['spectrum_eigenstates_manager']
                # job_name = 'spectrum_job_manager_' + params.params_filename_no_path
                job_name = 'lut_spectrum_N=' + str(params.N) + '_MminL=' + str(
                    params.MminLaughlin) + '_edges=' + str(
                        params.edge_states) + '_lz=' + str(lz)
                job_name = EC.make_job_name_short_again(job_name)
                JS.send_job(scriptNames.multiFile,
                            pbs_filename=job_name,
                            script_args=args,
                            queue=queue,
                            mem=mem,
                            vmem=vmem)

            all_file_names.append(filename_lz_spectrum)

    while not EC.all_files_exist(all_file_names):
        if not wait:
            print("not done creating spectrum! still must create " +
                  str(len(all_file_names)) + " out of " +
                  str(len(lz_vals_to_add_spectrum)))
            return
        sleep(100)

    lut_spectrum = {}
    for lz in lz_vals_to_add_spectrum:
        lz = int(lz)
        spec_states = FM.read_spectrum_eigenstates(
            params.MminLaughlin, params.MmaxLaughlin, params.edge_states,
            params.N, lz, params.hamiltonian_labels, params.h_parameters)
        spectrum = np.array(
            [spec_states[i][0] for i in range(len(spec_states))])
        print("***************")
        print(spectrum)
        lut_spectrum[lz] = spectrum

    title = 'Luttinger spectrum of system with N=' + str(
        params.N) + ' MminL=' + str(params.MminLaughlin) + ' MmaxL=' + str(
            params.MmaxLaughlin) + '\nham_lbls: ' + ' '.join(
                params.hamiltonian_labels) + '\nLz laughlin at ' + str(
                    params.lz_laughlin)
    xlabel = 'Lz total'
    ylabel = 'Energy'
    graphData.write_spectrum_data_to_file(filename_luttinger_spectrum,
                                          lut_spectrum, title, xlabel, ylabel)

    return lut_spectrum