def getallProtein():
'''
dao
:param AC:
:param do:
:return:
'''
do = DataOperation(db_name, table_target)
projection = {'_id': True, 'UNIPROID':True}
docs = do.GetALL(projection=projection,limit=0)
for protein in docs:
if protein['UNIPROID'] == '':continue
for pro in multiSplit(protein['UNIPROID']):
yield pro.strip()
def getallProtein(fout):
'''
dao
:param AC:
:param do:
:return:
'''
do = DataOperation('DrugKB', 'protein')
projection = {'_id': True, 'accession': True}
# one accession mapping several protein sequence
docs = do.GetALL(projection=projection, limit=0)
proteinlist = [
x['accession'][0]
if isinstance(x['accession'], list) else x['accession'] for x in docs
]
saveList(proteinlist, fout)