if WORKDIR == None:
WORKDIR = tempfile.mkdtemp()
workdir(WORKDIR, options.clearAll) # Select a working directory, optionally remove existing files
if not options.noLog:
log(options.clearAll, True, INPUT_TAG + "-" + options.eventTag + ".log") # Start logging into a file in working directory
print >> sys.stderr, "Work directory at", WORKDIR
eventDetectionInput = None
preprocessor = Preprocessor()
preprocessor.debug = options.debug
preprocessor.source = options.input # This has to be defined already here, needs to be fixed later
preprocessor.compressIntermediateFiles = True # save space
preprocessor.intermediateFilesAtSource = True # create output at source file location
preprocessor.requireEntitiesForParsing = True # parse only sentences which contain BANNER entities
if selector.check("PREPROCESS"):
if os.path.exists(preprocessor.getOutputPath("FIND-HEADS")):
print >> sys.stderr, "Preprocessor output", preprocessor.getOutputPath("FIND-HEADS"), "exists, skipping preprocessing."
eventDetectionInput = preprocessor.getOutputPath("FIND-HEADS")
else:
print >> sys.stderr, "Preprocessor output", preprocessor.getOutputPath("FIND-HEADS"), "does not exist"
print >> sys.stderr, "------------ Preprocessing ------------"
# Remove some of the unnecessary intermediate files
preprocessor.setIntermediateFile("CONVERT", None)
preprocessor.setIntermediateFile("SPLIT-SENTENCES", None)
preprocessor.setIntermediateFile("PARSE", None)
preprocessor.setIntermediateFile("CONVERT-PARSE", None)
preprocessor.setIntermediateFile("SPLIT-NAMES", None)
# Process input into interaction XML
omitPreprocessorSteps=["DIVIDE-SETS"]
if options.omitPreprocessorSteps != None:
omitPreprocessorSteps += [x.strip() for x in options.omitPreprocessorSteps.split(",")]