def create_integration_id(self, datacollect_id, comments):
autoproc_status = edFactoryPlugin.loadPlugin(
'EDPluginISPyBStoreAutoProcStatusv1_4')
status_input = XSDataInputStoreAutoProcStatus()
status_input.dataCollectionId = datacollect_id
status_input.anomalous = True
# needed even if we only want to get an integration ID?
status_data = AutoProcStatus()
status_data.step = "Indexing"
status_data.status = "Launched"
status_data.comments = comments
# Program
autoProcProgram = EDHandlerXSDataISPyBv1_4.createAutoProcProgram(
programId=None,
status="RUNNING",
timeStart=self.timeStart,
timeEnd=self.timeEnd,
processingCommandLine=self.processingCommandLine,
processingPrograms=self.processingPrograms)
status_input.AutoProcProgram = autoProcProgram
status_input.AutoProcStatus = status_data
autoproc_status.dataInput = status_input
# get our EDNAproc status id
autoproc_status.executeSynchronous()
return (autoproc_status.dataOutput.autoProcIntegrationId,
autoproc_status.dataOutput.autoProcProgramId)
def create_integration_id(datacollect_id):
autoproc_status = edFactoryPlugin.loadPlugin('EDPluginISPyBStoreAutoProcStatusv1_4')
status_input = XSDataInputStoreAutoProcStatus()
status_input.dataCollectionId = datacollect_id
# needed even if we only want to get an integration ID?
status_data = AutoProcStatus()
status_data.step = "Indexing"
status_data.status = "Launched"
status_data.comments = "Getting integration ID"
status_input.AutoProcStatus = status_data
autoproc_status.dataInput = status_input
# get our autoproc status id
autoproc_status.executeSynchronous()
return autoproc_status.dataOutput.autoProcIntegrationId
def log_to_ispyb_impl(integration_id, step, status, comments=""):
# hack in the event we could not create an integration ID
if integration_id is None:
EDVerbose.ERROR('could not log to ispyb: no integration id')
return
autoproc_status = edFactoryPlugin.loadPlugin('EDPluginISPyBStoreAutoProcStatusv1_4')
status_input = XSDataInputStoreAutoProcStatus()
status_input.autoProcIntegrationId = integration_id
status_data = AutoProcStatus()
status_data.step = step
status_data.status = status
status_data.comments = comments
status_input.AutoProcStatus = status_data
autoproc_status.dataInput = status_input
autoproc_status.executeSynchronous()
def create_integration_id(datacollect_id):
autoproc_status = edFactoryPlugin.loadPlugin(
'EDPluginISPyBStoreAutoProcStatusv1_4')
status_input = XSDataInputStoreAutoProcStatus()
status_input.dataCollectionId = datacollect_id
# needed even if we only want to get an integration ID?
status_data = AutoProcStatus()
status_data.step = "Indexing"
status_data.status = "Launched"
status_data.comments = "Getting integration ID"
status_input.AutoProcStatus = status_data
autoproc_status.dataInput = status_input
# get our autoproc status id
autoproc_status.executeSynchronous()
return autoproc_status.dataOutput.autoProcIntegrationId
def log_to_ispyb_impl(integration_id, step, status, comments=""):
# hack in the event we could not create an integration ID
if integration_id is None:
EDVerbose.ERROR('could not log to ispyb: no integration id')
return
autoproc_status = edFactoryPlugin.loadPlugin(
'EDPluginISPyBStoreAutoProcStatusv1_4')
status_input = XSDataInputStoreAutoProcStatus()
status_input.autoProcIntegrationId = integration_id
status_data = AutoProcStatus()
status_data.step = step
status_data.status = status
status_data.comments = comments
status_input.AutoProcStatus = status_data
autoproc_status.dataInput = status_input
autoproc_status.executeSynchronous()
__author__="Thomas Boeglin"
__license__ = "GPLv3+"
__copyright__ = "ESRF"
import os.path
import shutil
from EDPluginControl import EDPluginControl
from EDVerbose import EDVerbose
from XSDataCommon import XSDataString, XSDataBoolean, XSDataStatus
from XSDataBurnStrategy import XSDataInputXdsBurnStrategy, XSDataOutputXdsBurnStrategy
from EDFactoryPlugin import edFactoryPlugin
edFactoryPlugin.loadPlugin('EDPluginExecMinimalXds')
from XSDataAutoproc import XSDataMinimalXdsIn
from xdscfgparser import parse_xds_file, dump_xds_file
class EDPluginControlXdsBurnStrategy(EDPluginControl):
"""
This plugin runs XDS with the specified input file, unit cell
constants and spacegroup
"""
def __init__(self):
"""
"""
EDPluginControl.__init__(self)
__author__ = "Thomas Boeglin"
__license__ = "GPLv3+"
__copyright__ = "ESRF"
import os.path
import shutil
from EDPluginControl import EDPluginControl
from EDVerbose import EDVerbose
from XSDataCommon import XSDataString, XSDataBoolean, XSDataStatus
from XSDataBurnStrategy import XSDataInputXdsBurnStrategy, XSDataOutputXdsBurnStrategy
from EDFactoryPlugin import edFactoryPlugin
edFactoryPlugin.loadPlugin('EDPluginExecMinimalXds')
from XSDataAutoproc import XSDataMinimalXdsIn
from xdscfgparser import parse_xds_file, dump_xds_file
class EDPluginControlXdsBurnStrategy(EDPluginControl):
"""
This plugin runs XDS with the specified input file, unit cell
constants and spacegroup
"""
def __init__(self):
"""
"""
EDPluginControl.__init__(self)
self.setXSDataInputClass(XSDataInputXdsBurnStrategy)