def __init__( self, _oalStringTestName = None):
"""
"""
EDTestCasePluginUnit.__init__( self, "EDPluginExecSRBRegisterv10", "EDPluginExecSRBRegister-v1.0", _oalStringTestName )
self.m_edStringReferenceDataInputFile = EDDiskExplorer.mergePath( self.getPluginTestsDataHome(), "XSDataInputPluginExecSRBRegister_reference.xml")
self.m_edStringReferenceDataInputFile2 = EDDiskExplorer.mergePath( self.getPluginTestsDataHome(), "XSDataInputPluginExecSRBRegister_reference2.xml")
self.m_edStringReferenceDataInputFile3 = EDDiskExplorer.mergePath( self.getPluginTestsDataHome(), "XSDataInputPluginExecSRBRegister_reference3.xml")
def preProcess( self, _oedObject = None ):
EDPluginSTACv10.preProcess( self )
self.DEBUG( "EDPluginSTACalignmentv01.preProcess")
#bestfile.par
EDUtilsFile.writeFile( EDDiskExplorer.mergePath( self.getWorkingDirectory(), "bestfile.par" ), self.m_xsDataInput.getBestFileContentPar().getValue())
#self.writeAlignmentRequest() - for now use a predefined request
EDUtilsFile.writeFile( EDDiskExplorer.mergePath( self.getWorkingDirectory(), "DNA_kappa_alignment_request" ), "<?xml version=\"1.0\" encoding=\"ISO-8859-1\"?><kappa_alignment_request><desired_orientation><v1>a*</v1><v2>b*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>a*</v1><v2>c*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>b*</v1><v2>a*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>b*</v1><v2>c*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>c*</v1><v2>a*</v2><close>true</close><comment></comment></desired_orientation><desired_orientation><v1>c*</v1><v2>b*</v2><close>false</close><comment></comment></desired_orientation><comment>First test parameter passed</comment></kappa_alignment_request>")
#self.writeKappaSettings() - for now use a predefined datum (0;0;0)
EDUtilsFile.writeFile( EDDiskExplorer.mergePath( self.getWorkingDirectory(), "DNA_STAC_Kappa_Settings" ), "<?xml version=\"1.0\" encoding=\"ISO-8859-1\"?><kappa_collect_settings><motorSettings><motorName>Omega</motorName><motorValue>0</motorValue></motorSettings><motorSettings><motorName>Kappa</motorName><motorValue>0.000000</motorValue></motorSettings><motorSettings><motorName>Phi</motorName><motorValue>0</motorValue></motorSettings><motorSettings><motorName>X</motorName><motorValue>0.261444</motorValue></motorSettings><motorSettings><motorName>Y</motorName><motorValue>-0.085559</motorValue></motorSettings><motorSettings><motorName>Z</motorName><motorValue>0.659333</motorValue></motorSettings><comment>BCM query performed by STAC</comment></kappa_collect_settings>")
def preProcess( self, _oedObject = None ):
EDPluginSTACv10.preProcess( self )
self.DEBUG( "EDPluginSTACalignmentv01.preProcess")
#bestfile.par
EDUtilsFile.writeFile( EDDiskExplorer.mergePath( self.getWorkingDirectory(), "bestfile.par" ), self.m_oxsDataBestFileContentPar.getValue())
#self.writeStrategyRequest()
EDUtilsFile.writeFile( EDDiskExplorer.mergePath( self.getWorkingDirectory(), "DNA_kappa_strategy_request" ), self.m_xsDataInput.marshal() )
#self.writeKappaSettings() - for now use a predefined datum (0;0;0)
EDUtilsFile.writeFile( EDDiskExplorer.mergePath( self.getWorkingDirectory(), "DNA_STAC_Kappa_Settings" ), "<?xml version=\"1.0\" encoding=\"ISO-8859-1\"?><kappa_collect_settings><motorSettings><motorName>Omega</motorName><motorValue>0</motorValue></motorSettings><motorSettings><motorName>Kappa</motorName><motorValue>0.000000</motorValue></motorSettings><motorSettings><motorName>Phi</motorName><motorValue>0</motorValue></motorSettings><motorSettings><motorName>X</motorName><motorValue>0.261444</motorValue></motorSettings><motorSettings><motorName>Y</motorName><motorValue>-0.085559</motorValue></motorSettings><motorSettings><motorName>Z</motorName><motorValue>0.659333</motorValue></motorSettings><comment>BCM query performed by STAC</comment></kappa_collect_settings>")
def fetchOutput( self ):
"""
method for reading back the specific output
"""
# Then read the XML file
self.m_oxsKappaResponse = kappa_strategy_response.parseFile( EDDiskExplorer.mergePath( self.getWorkingDirectory(), "STAC_DNA_kappa_strategy_response" ) )
return self.m_oxsKappaResponse
def fetchOutput(self):
"""
method for reading back the specific output
"""
self.m_oxsKappaAlignmentResponse = kappa_alignment_response.parseFile(
EDDiskExplorer.mergePath(self.getWorkingDirectory(),
"STAC_DNA_kappa_alignment_response"))
return self.m_oxsKappaAlignmentResponse
def fetchOutput(self):
"""
method for reading back the specific output
"""
# Then read the XML file
self.m_oxsKappaResponse = kappa_strategy_response.parseFile(
EDDiskExplorer.mergePath(self.getWorkingDirectory(),
"STAC_DNA_kappa_strategy_response"))
return self.m_oxsKappaResponse
def __init__(self, _oalStringTestName=None):
"""
"""
EDTestCasePluginUnit.__init__(self, "EDPluginControlDLSArchiverv10",
"EDPluginControlDLSArchiver-v1.0",
_oalStringTestName)
self.m_edStringReferenceDataInputFile = EDDiskExplorer.mergePath(
self.getPluginTestsDataHome(),
"XSDataInputPluginControlDLSArchiverv10_reference.xml")
def preProcess(self, _oedObject=None):
EDPluginSTACv10.preProcess(self)
self.DEBUG("EDPluginSTACalignmentv01.preProcess")
#bestfile.par
EDUtilsFile.writeFile(
EDDiskExplorer.mergePath(self.getWorkingDirectory(),
"bestfile.par"),
self.m_oxsDataBestFileContentPar.getValue())
#self.writeStrategyRequest()
EDUtilsFile.writeFile(
EDDiskExplorer.mergePath(self.getWorkingDirectory(),
"DNA_kappa_strategy_request"),
self.m_xsDataInput.marshal())
#self.writeKappaSettings() - for now use a predefined datum (0;0;0)
EDUtilsFile.writeFile(
EDDiskExplorer.mergePath(self.getWorkingDirectory(),
"DNA_STAC_Kappa_Settings"),
"<?xml version=\"1.0\" encoding=\"ISO-8859-1\"?><kappa_collect_settings><motorSettings><motorName>Omega</motorName><motorValue>0</motorValue></motorSettings><motorSettings><motorName>Kappa</motorName><motorValue>0.000000</motorValue></motorSettings><motorSettings><motorName>Phi</motorName><motorValue>0</motorValue></motorSettings><motorSettings><motorName>X</motorName><motorValue>0.261444</motorValue></motorSettings><motorSettings><motorName>Y</motorName><motorValue>-0.085559</motorValue></motorSettings><motorSettings><motorName>Z</motorName><motorValue>0.659333</motorValue></motorSettings><comment>BCM query performed by STAC</comment></kappa_collect_settings>"
)
def __init__(self, _oalStringTestName=None):
"""
"""
EDTestCasePluginExecute.__init__(self, "EDPluginExecSRBRegisterv10",
"EDPluginExecSRBRegister-v1.0",
_oalStringTestName)
self.setConfigurationFile(self.getRefConfigFile())
self.setDataInputFile(
EDDiskExplorer.mergePath(
self.getPluginTestsDataHome(),
"XSDataInputPluginExecSRBRegister_reference.xml"))
def preProcess(self, _oedObject=None):
EDPluginSTACv10.preProcess(self)
self.DEBUG("EDPluginSTACalignmentv01.preProcess")
#bestfile.par
EDUtilsFile.writeFile(
EDDiskExplorer.mergePath(self.getWorkingDirectory(),
"bestfile.par"),
self.m_xsDataInput.getBestFileContentPar().getValue())
#self.writeAlignmentRequest() - for now use a predefined request
EDUtilsFile.writeFile(
EDDiskExplorer.mergePath(self.getWorkingDirectory(),
"DNA_kappa_alignment_request"),
"<?xml version=\"1.0\" encoding=\"ISO-8859-1\"?><kappa_alignment_request><desired_orientation><v1>a*</v1><v2>b*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>a*</v1><v2>c*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>b*</v1><v2>a*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>b*</v1><v2>c*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>c*</v1><v2>a*</v2><close>true</close><comment></comment></desired_orientation><desired_orientation><v1>c*</v1><v2>b*</v2><close>false</close><comment></comment></desired_orientation><comment>First test parameter passed</comment></kappa_alignment_request>"
)
#self.writeKappaSettings() - for now use a predefined datum (0;0;0)
EDUtilsFile.writeFile(
EDDiskExplorer.mergePath(self.getWorkingDirectory(),
"DNA_STAC_Kappa_Settings"),
"<?xml version=\"1.0\" encoding=\"ISO-8859-1\"?><kappa_collect_settings><motorSettings><motorName>Omega</motorName><motorValue>0</motorValue></motorSettings><motorSettings><motorName>Kappa</motorName><motorValue>0.000000</motorValue></motorSettings><motorSettings><motorName>Phi</motorName><motorValue>0</motorValue></motorSettings><motorSettings><motorName>X</motorName><motorValue>0.261444</motorValue></motorSettings><motorSettings><motorName>Y</motorName><motorValue>-0.085559</motorValue></motorSettings><motorSettings><motorName>Z</motorName><motorValue>0.659333</motorValue></motorSettings><comment>BCM query performed by STAC</comment></kappa_collect_settings>"
)
def fetchOutput( self ):
"""
method for reading back the specific output
"""
self.m_oxsKappaAlignmentResponse = kappa_alignment_response.parseFile( EDDiskExplorer.mergePath( self.getWorkingDirectory(), "STAC_DNA_kappa_alignment_response" ) )
return self.m_oxsKappaAlignmentResponse
def __init__( self, _oalStringTestName = None):
"""
"""
EDTestCasePluginExecute.__init__( self, "EDPluginExecICATIngesterv10", "EDPluginExecICATIngester-v1.0", _oalStringTestName )
self.setConfigurationFile( self.getRefConfigFile() )
self.setDataInputFile( EDDiskExplorer.mergePath( self.getPluginTestsDataHome(), "XSDataInputPluginExecICATIngester_reference.xml" ) )
def __init__( self, _oalStringTestName = None):
"""
"""
EDTestCasePluginUnit.__init__( self, "EDPluginControlDLSArchiverv10", "EDPluginControlDLSArchiver-v1.0", _oalStringTestName )
self.m_edStringReferenceDataInputFile = EDDiskExplorer.mergePath( self.getPluginTestsDataHome(), "XSDataInputPluginControlDLSArchiverv10_reference.xml")