def preProcess(self, _edObject=None):
EDPluginMOSFLMv10.preProcess(self)
self.DEBUG("EDPluginMOSFLMIndexingv10.preProcess")
self.generateMOSFLMCommands()
# Hack for getting MOSFLM to work with Eiger2 16M images
xsDataMOSFLMIndexingInput = self.getDataInput()
noImages = len(xsDataMOSFLMIndexingInput.image)
if noImages > 1 and xsDataMOSFLMIndexingInput.detector.numberPixelX.value == 4148 and \
xsDataMOSFLMIndexingInput.detector.numberPixelY.value == 4362:
directory = xsDataMOSFLMIndexingInput.directory.value
masterFile = xsDataMOSFLMIndexingInput.template.value
workingDirectory = self.getWorkingDirectory()
# First change the number of images in the master file
shutil.copy(os.path.join(directory, masterFile), workingDirectory)
f1 = h5py.File(os.path.join(workingDirectory, masterFile), "r+")
f1['entry']['instrument']['detector']['detectorSpecific'][
'nimages'][()] = noImages
f1.close()
# Then copy all images to the same data file
dataFilePath = os.path.join(
workingDirectory, masterFile.replace("master", "data_000001"))
f2 = h5py.File(dataFilePath, 'w')
data_000001 = f2.create_dataset('/entry/data/data',
(noImages, 4362, 4148),
dtype="uint32")
for imageNumber in range(1, noImages + 1):
masterFileN = masterFile.replace(
"_1_master", "_{0}_master".format(imageNumber))
fn = h5py.File(os.path.join(directory, masterFileN), 'r')
datan = fn['entry']['data']['data_000001'][()]
data_000001[imageNumber - 1, :, :] = datan[0, :, :]
fn.close()
f2.close()
# Modify DIRECTORY to working directory
listCommands = self.getListCommandExecution()
for index in range(len(listCommands)):
if listCommands[index].startswith("DIRECTORY"):
listCommands[index] = "DIRECTORY " + workingDirectory
break
self.setListCommandExecution(listCommands)
def preProcess(self, _edObject=None):
EDPluginMOSFLMv10.preProcess(self)
self.DEBUG("EDPluginMOSFLMIntegrationv10.preProcess")
self.generateMOSFLMCommands()
def preProcess(self, _edObject=None):
EDPluginMOSFLMv10.preProcess(self)
self.DEBUG("EDPluginMOSFLMIntegrationv10.preProcess")
self.generateMOSFLMCommands()
def preProcess(self, _edObject=None):
EDPluginMOSFLMv10.preProcess(self)
EDVerbose.DEBUG("EDPluginMOSFLMGeneratePredictionv10.preProcess")
self.generateMOSFLMCommands()
