def create_case_widget(self):
controller = self.controller
if controller.ds is None:
return
by_signature = Checkbox(
description='Cases indicated by signature?',
value=self.by_signature
)
case_id = Text(description='* Analysis for case:')
if 'biological_constraints' not in controller.options:
bio_constraints = ''
else:
bio_constraints = ', '.join(controller.defaults('biological_constraints'))
constraints = Textarea(description='Biological constraints:',
value=bio_constraints)
button = Button(description='Create Analysis')
button.on_click(self.create_report)
button.case_id = case_id
button.by_signature = by_signature
button.constraints = constraints
wi = VBox(children=[by_signature,
case_id,
constraints,
button])
return ('Analyze Case', wi)
def colocalization_widget(self):
controller = self.controller
cases = Textarea(description='* Cases to co-localize:')
by_signature = Checkbox(description='Cases indicated by signature?',
value=self.by_signature)
slice_variables = Textarea(description='* Slice variables:')
if 'biological_constraints' not in controller.options:
bio_constraints = ''
else:
bio_constraints = ', '.join(controller.defaults('biological_constraints'))
constraints = Textarea(description='Biological constraints:',
value=bio_constraints)
button = Button(description='Create Co-Localization')
button.on_click(self.make_colocalization)
button.cases = cases
button.by_signature = by_signature
button.slice_variables = slice_variables
button.constraints = constraints
wi = VBox(children=[cases,
by_signature,
slice_variables,
constraints,
button])
return ('Co-localizations', wi)
def edit_equations_widget(self, editing=False):
kinetic_orders = self.options['kinetic_orders']
if kinetic_orders is None:
kinetic_orders = []
name = Text(description='* Name', value=self.name)
version = Text(description='Version', value=self.version)
self.version_field = version
equations=Textarea(description='* Equations',
value='\n'.join(self.equations))
aux=Textarea(description='Auxiliary Variables',
value=', '.join(self.auxiliary))
html = HTML(value='<b>Architectural Constraints</b>')
constraints=Textarea(description='Parameters',
value=', '.join(self.constraints)
)
options_html = HTML(value='<b>Additional Options</b>')
cyclical = Checkbox(description='Check for Cycles',
value = self.cyclical)
codominance = Checkbox(description='Check for Co-dominance',
value = self.codominance)
recast = Checkbox(description='Recast Equations',
value = self.recast)
replacements=Textarea(description='Kinetic Orders',
value=', '.join(
[i for i in kinetic_orders]))
wi = VBox(children=[equations,
aux, html,
constraints, replacements,
options_html, cyclical,
codominance,recast,
])
button = Button(value=False,
description='Create Design Space')
button.on_click(self.make_design_space)
button.equations = equations
button.aux = aux
button.constraints = constraints
button.cyclical = cyclical
button.codominance = codominance
button.recast = recast
button.replacements = replacements
button.wi = wi
button.name = name
## button.version = version
load = Button(value=False,
description='Load Data')
load.on_click(self.load_widget)
load.equations = equations
## load.version = version
load.aux = aux
load.constraints = constraints
load.cyclical = cyclical
load.codominance = codominance
load.replacements = replacements
load.wi = wi
load.name = name
load.button = button
button.load = load
edit_symbols = Button(value=False, description='Edit Symbols')
edit_symbols.on_click(self.create_edit_symbols)
edit_parameters = Button(value=False, description='Edit Parameters')
edit_parameters.on_click(self.create_edit_parameters)
button.edit_symbols = edit_symbols
button.edit_parameters = edit_parameters
edit_equations = VBox(description='Edit Equations',
children=[name, version, wi,
edit_symbols,
edit_parameters,
button,
load])
wi.visible = False
edit_symbols.visible = False
edit_parameters.visible = False
if self.ds is not None:
wi.visible = True
## self.update_widgets()
self.make_options_menu(button)
if editing is True:
self.make_design_space(button)
return edit_equations
