def getMotifGff(self): """Get a GFF with the best motifs for all sequences""" gff_dict = self.findMotifs() gff = [] for motif in gff_dict.values(): gff.extend(motif) bestfile = GffFile() bestfile.gff = gff gfffilename = self.tempFile("gff", bestfile.getFormattedGff()) return gfffilename