def map_to_owl(json_data):
for d in json_data:
"""mapping json data to ontology properties"""
name = Preprocessor.toolname_underline(d['name'])
# name = re.sub("[()-*,/]", " ", name).strip()
executable = Preprocessor.normalize("saga_cmd ", d['command']['exec'])
keywords = d['keywords']
toolClass = tool_class(keywords)
if onto[name]:
# if has the same name and executable
if onto[name].executable == executable:
onto[name].is_a.append(toolClass)
continue
else:
name = name + '_' + keywords[0].replace(' ', '_')
tool = toolClass(name,
prefLabel=locstr(re.sub('^(Tool)[0-9: ]+', '',
d['name']),
lang='en'))
# tool = toolClass(Preprocessor.space_2_underline(name), prefLabel=locstr(re.sub('^(Tool)[0-9: ]+', '', d['name']), lang='en'))
tool.isToolOfSoftware.append(cyber.SAGA_GIS)
tool.identifier = name
tool.manualPageURL.append(d['manual_url'])
# task
handle_task(tool, name, d['name'], keywords,
OWLUtils.join_list(d['description']))
tool.executable = executable
tool.commandLine.append(
Preprocessor.normalize("Usage: ", d['command']['cmd_line']))
tool.authors.append(OWLUtils.join_keywords(d['authors']))
for reference in d['references']:
tool.references.append(reference)
# keywords
keywords.append(name.replace('_', ' '))
OWLUtils.link_to_domain_concept(tool, keywords)
# applicaiton category
OWLUtils.application_category(tool, [d['keywords'][0]],
d['keywords'][1], d['keywords'][2:])
tool.description.append(OWLUtils.join_list(d['description']))
if d['parameters']:
for item, itemValue in d['parameters'].items():
if item == 'inputs':
handle_inout(tool, itemValue, 'input')
elif item == 'outputs':
handle_inout(tool, itemValue, 'output')
elif item == 'options':
for optionItem in itemValue:
handle_options(tool, optionItem, onto)
def map_to_owl(json_data):
for d in json_data:
"""mapping json data to ontology properties"""
# instance 实例
name = Preprocessor.name_underline(d['name'])
toolClass = tool_class(d['name'])
tool = toolClass(name, prefLabel=locstr(d['name'], lang='en'))
tool.isToolOfSoftware.append(cyber.TauDEM)
tool.identifier = name
description = OWLUtils.join_list(d['description'])
keywords = OWLUtils.to_keywords(description)
keywords.extend(name.replace('_', ' ').split(' '))
# keywords=name.replace('_', ' ').split(' ')
OWLUtils.link_to_domain_concept(tool, keywords)
for k, v in d.items():
# 外层, 参数
if (k in ['parameters', 'options']) and type(v) == list:
for i, item in enumerate(v):
param = None
# localname = v[i]['parameterName']
localname = Preprocessor.space_2_underline(item['parameterName'])
_label = localname.replace('_', ' ')
if item['isInputFile']:
param = TauDEMInput(localname, prefLabel=locstr(_label, lang='en'))
# param = TauDEMInput(prefLabel=locstr(_label, lang='en'))
# input geo data ? rule: format-> geoformat->geo data
tool.input.append(param)
handle_params(param, item)
param.isInput = True
elif item['isOutputFile']: # localname.lower().startswith('output_', 0, len('output_')):
param = TauDEMOutput(localname, prefLabel=locstr(_label, lang='en'))
# param = TauDEMOutput(prefLabel=locstr(_label, lang='en'))
tool.output.append(param)
handle_params(param, item)
param.isOutput = True
else:
param = TauDEMOption(localname, prefLabel=locstr(_label, lang='en'))
# param = TauDEMOption(prefLabel=locstr(localname.replace('_', ' '), lang='en'))
tool.option.append(param)
handle_params(param, item)
OWLUtils.link_to_domain_concept(param, _label)
param.identifier = localname
else:
prop = get_property(k, DataProperty)
if not v:
continue
if type(v) == list and len(v) > 0:
v = ''.join(v)
OWLUtils.set_data_property(tool, prop, v)
# task
handle_task(tool, name, d['name'], description)
OWLUtils.application_category(tool, 'Geomorphometry', 'digital terrain analysis', 'hydrology')
def map_to_owl(json_data):
for d in json_data:
"""mapping json data to ontology properties"""
name = re.match("[0-9a-zA-Z\-/* ]+ (?=\([\w' ]+\))",
d['name']) # 存在同名冲突
if name:
name_str = name.group().strip().lower().replace(' ', '_').replace(
'/', '_')
else:
continue
category = get_task_type(d['name'])
toolCls = tool_class(category)
# if already exists a instance has the same name
if onto[name_str]:
# if is the same
if onto[name_str].syntax == d['syntax']:
onto[name_str].is_a.append(toolCls)
continue
else:
name_str = name_str + '_' + category.lower().replace(' ', '_')
tool = toolCls(name_str,
prefLabel=locstr(name_str.replace('_', ' '), lang='en'))
keywords = [name_str.replace('_', ' ')]
OWLUtils.link_to_domain_concept(tool, keywords)
tool.isToolOfSoftware.append(cyber.ArcGIS_Desktop)
tool.identifier = name_str.replace('_', ' ')
# tool.hasManualPageURL.append(d['manual_url'])
tool.description.append(locstr(d['description'], lang='en'))
tool.usage.append(OWLUtils.join_list(d['usage']))
tool.syntax.append(d['syntax'])
tool.example.append(handle_example(d['example']))
handle_task(tool, d['name'], name_str, d['description'])
for parameter in d['parameters']:
handle_parameters(tool, parameter)