###modelling free parameters are:
# space craft distance
# subspacecraft long,lat,az
# subsolar long, lat, az
# y,z image offsets in km
# offsetVel in km/s
# offsetVelAngle in degrees
###Chosen parameters are:
# polyOrder for the velocity modelling
if loadBestPoint:
(bestPoint,goodSamps)=getFit('/Users/fraserw/data/VIMS/covims_0004/procdata/%s.fit_pickle'%(imageName))
(ll,l)=goodSamps.shape
#w=num.where(goodSamps[:,13]>bestPoint[13]-2)
#for i in range(len(w[0])):
# print goodSamps[w[0][i]]
#sys.exit()
[long_o_not,lat_o_not,az_o_not,long_s,lat_s,az_s,distancenot,offXV,offYV,offXI,offYI,offsetVel,offsetVelAngle,chi]=bestPoint
offsetsVis=num.array([offXV,offYV])
offsetsIR =num.array([offXI,offYI])
(imageVis,poly3d,colours,rot_vert,vertsInPixelVis,chi)=shapeGen_VIMS(vertices,vertIndices,
long_o_not,lat_o_not,az_o_not,
long_s,lat_s,az_s,
distancenot,
offsetsVis, offsetVel,offsetVelAngle,
sampler.reset()
pos, prob, state = sampler.run_mcmc(pos, nStep, rstate0=state)
samps=sampler.chain
probs=sampler.lnprobability
with open('/data/VIMS/covims_0004/procdata/%s.fit_pickle'%(imageName),'w+') as outHan:
pick.dump([samps,probs],outHan)
print sampler.chain
print
print sampler.lnprobability
(bestPoint,goodSamps)=getFit('/data/VIMS/covims_0004/procdata/%s.fit_pickle'%(imageName))
print bestPoint
if exitAfterFit: sys.exit()
if doFitsNoVel:
x,y=0.,0.
nDim=11
nWalkers=nDim*4
nBurn=30
nStep=30
steps=0
offWidth=20.
angWidth=10.