def test_wc_pair(self):
seg1 = self.universe.residues[3].atoms.segids[0]
seg2 = self.universe.residues[19].atoms.segids[0]
wc = nuclinfo.wc_pair(self.universe, 4, 20, seg1, seg2)
assert_almost_equal(
wc,
2.9810174,
err_msg="Watson-Crick distance does not match expected value.")
def test_wc_pair_2(self):
val = nuclinfo.wc_pair(self.u, 22, 23, seg1='RNAA', seg2='RNAA')
assert_almost_equal(val, 4.601, decimal=3)
def test_wc_pair_1(self):
val = nuclinfo.wc_pair(self.u, 1, 2, seg1='RNAA', seg2='RNAA')
assert_almost_equal(val, 4.449, decimal=3)
def test_wc_pair(universe):
seg1 = universe.residues[3].atoms.segids[0]
seg2 = universe.residues[19].atoms.segids[0]
wc = nuclinfo.wc_pair(universe, 4, 20, seg1, seg2)
assert_almost_equal(wc, 2.9810174, err_msg="Watson-Crick distance does not match expected value.")
def test_wc_pair_2(self):
val = nuclinfo.wc_pair(self.u, 22, 23, seg1='RNAA', seg2='RNAA')
assert_almost_equal(val, 4.601, decimal=3)
def test_wc_pair_1(self):
val = nuclinfo.wc_pair(self.u, 1, 2, seg1='RNAA', seg2='RNAA')
assert_almost_equal(val, 4.449, decimal=3)
def test_wc_pair(u, i, bp, seg1, seg2, expected_value):
val = nuclinfo.wc_pair(u, i, bp, seg1=seg1, seg2=seg2)
assert_almost_equal(val, expected_value, decimal=3)
def test_wc_pair(u, i, bp, seg1, seg2, expected_value):
val = nuclinfo.wc_pair(u, i, bp, seg1=seg1, seg2=seg2)
assert_almost_equal(val, expected_value, decimal=3)
def test_wc_pair(self):
seg1 = self.universe.residues[3].segids()[0]
seg2 = self.universe.residues[19].segids()[0]
wc = numpy.array(nuclinfo.wc_pair(self.universe, 4, 20, seg1, seg2), dtype=numpy.float32)
assert_almost_equal(wc, 2.9810174, err_msg="Watson-Crick distance does not match expected value.")
