print("</td><td valign=top>")
print(web.linkFile((karyo, md5), "indivs", "plink individual file"))
ids = sql.getIds(md5)
print("<table border=1><tr><td>Study</td><td>Usage</td></tr>")
for id in ids:
toks = id[0].split("/")
if toks[0] != "study":
continue
study = toks[1]
if len(toks) > 3:
usage = toks[2]
else:
usage = " "
print("<tr><td>%s</td><td>%s</td></tr>" % (web.getStudyURL(study), usage))
print("</table>")
print('<h2>Zoom</h2>')
for name in os.listdir('%s/sets/%s/%s' % (MEGA.cacheDB, karyo, md5)):
if name.endswith('.zoom'):
toks = name[:-5].split('-')
print(web.linkFile((karyo, md5), name,
'%s: chro %s (%s-%s)' % (toks[0], toks[1], toks[2], toks[3]),
fType='text/plain'))
print('<br/>')
print("</td></tr></table>")
import MEGA
from MEGA import karyo, web
web.sendPreamble(None, None, "Studies")
print("""<h1>Studies</h1>
<table border="1">
""")
for studyName in MEGA.studies:
study = MEGA.studies[studyName]
study.configStudy()
def getHash(popStudy):
return MEGA.getHash(study.pops.getIndivs(popStudy))
inURLs = web.getPopsURLs(study.pops.pops, karyo.karyotype,
[getHash(x) for x in study.pops.pops])
print("""
<tr><td colspan="2" align="center"><b>Study: </b>%s</td></tr>
<tr><td colspan="2">%s</td></tr>
<tr><td colspan="2">%s</td></tr>
<tr><td>%s</td></tr>
""" % (web.getStudyURL(studyName), study.desc,
study.summary,
", ".join(inURLs)))
print("</table>")
