Python Hausdorff_Distance.getHausdorffDistance Beispiele

Beispiel #1

Datei: error_v1.py Projekt: mbarbie1/fiji-registration-plugins

def test_HD():

	imp = IJ.openImage(filePath.getAbsolutePath())
	stack = imp.getStack()
	ip1 = stack.getProcessor(1).duplicate()
	ip2 = stack.getProcessor(2).duplicate()
	[ip1, s] = scaleLongSide(ip1, longSide)
	if (Scale == 1):
		ip2 = scale(ip2, s)
	maskA = impMask1.duplicate()
	maskB = impMask2.duplicate()

#	IJ.run(maskA, "Invert", "")
#	IJ.run(maskB, "Invert", "")
	IJ.run(maskA, "Outline", "")
	IJ.run(maskB, "Outline", "")
#	IJ.run(maskA, "Invert", "")
#	IJ.run(maskB, "Invert", "")
	maskA.show()
	maskB.show()

	impMask1.show()
	MaskArea1 = maskArea( impMask1.getProcessor() )
	impMask2.show()
	MaskArea2 = maskArea( impMask2.getProcessor() )
	hd = Hausdorff_Distance()
	hd.exec( maskA, maskB )
	print(hd.getAveragedHausdorffDistance())
	print(hd.getHausdorffDistance())

Beispiel #2

def test_HD():

    imp = IJ.openImage(filePath.getAbsolutePath())
    stack = imp.getStack()
    ip1 = stack.getProcessor(1).duplicate()
    ip2 = stack.getProcessor(2).duplicate()
    [ip1, s] = scaleLongSide(ip1, longSide)
    if (Scale == 1):
        ip2 = scale(ip2, s)
    maskA = impMask1.duplicate()
    maskB = impMask2.duplicate()

    #	IJ.run(maskA, "Invert", "")
    #	IJ.run(maskB, "Invert", "")
    IJ.run(maskA, "Outline", "")
    IJ.run(maskB, "Outline", "")
    #	IJ.run(maskA, "Invert", "")
    #	IJ.run(maskB, "Invert", "")
    maskA.show()
    maskB.show()

    impMask1.show()
    MaskArea1 = maskArea(impMask1.getProcessor())
    impMask2.show()
    MaskArea2 = maskArea(impMask2.getProcessor())
    hd = Hausdorff_Distance()
    hd.exec(maskA, maskB)
    print(hd.getAveragedHausdorffDistance())
    print(hd.getHausdorffDistance())

Beispiel #3

Datei: error_v1.py Projekt: mbarbie1/fiji-registration-plugins

def hdist( ip1, ip2 ):

	mask1 = ImagePlus('mask1',ip1)
	mask2 = ImagePlus('mask2',ip2)
	# make outlines from the masks
	IJ.run(mask1, "Outline", "")
	IJ.run(mask2, "Outline", "")
	hd = Hausdorff_Distance()
	hd.exec( mask1, mask2 )

	return hd.getHausdorffDistance(), hd.getAveragedHausdorffDistance()

Beispiel #4

def hdist(ip1, ip2):

    mask1 = ImagePlus('mask1', ip1)
    mask2 = ImagePlus('mask2', ip2)
    # make outlines from the masks
    IJ.run(mask1, "Outline", "")
    IJ.run(mask2, "Outline", "")
    hd = Hausdorff_Distance()
    hd.exec(mask1, mask2)

    return hd.getHausdorffDistance(), hd.getAveragedHausdorffDistance()