def get_destination_plates_and_start(mutant):
if mutant == 'universal':
return ([plates['universal']], 'A01')
elif mutant == get_mutant('dhc-1'):
return ([plates['hybrid 3']], 'A01')
elif mutant == get_mutant('div-1'):
return ([plates['hybrid 1']], 'A01')
elif mutant == get_mutant('emb-27'):
return ([plates['hybrid 2']], 'A01')
elif mutant == get_mutant('emb-30'):
return ([plates['hybrid 3']], 'A03')
elif mutant == get_mutant('emb-8'):
return ([plates['hybrid 3']], 'A08')
elif mutant == get_mutant('glp-1'):
return ([plates['hybrid 4']], 'A01')
elif mutant == get_mutant('hcp-6'):
return ([plates['hcp-6']], 'A01')
elif mutant == get_mutant('lin-5'):
return ([plates['hybrid 4']], 'A03')
elif mutant == get_mutant('mat-1'):
return ([plates['hybrid 4']], 'A04')
elif mutant == get_mutant('mbk-2'):
return ([plates['hybrid 4']], 'A12')
elif mutant == get_mutant('mel-26'):
return ([plates['hybrid 5']], 'A01')
elif mutant == get_mutant('par-1'):
return ([plates['hybrid 5']], 'A06')
elif mutant == get_mutant('par-2'):
return ([plates['hybrid 5']], 'A12')
elif mutant == get_mutant('par-4'):
return ([plates['hybrid 6']], 'A01')
elif mutant == get_mutant('pod-2'):
return ([plates['hybrid 2']], 'A09')
elif mutant == get_mutant('rme-8'):
return ([plates['hybrid 6']], 'A03')
elif mutant == get_mutant('spd-5'):
return ([plates['hybrid 6']], 'A08')
elif mutant == get_mutant('spn-4'):
return ([plates['hybrid 6']], 'A09')
elif mutant == get_mutant('tba-1'):
return ([plates['tba-1 1'], plates['tba-1 2']], 'A01')
elif mutant == get_mutant('zen-4'):
return ([plates['hybrid 1']], 'A04')
elif mutant == get_mutant('zyg-1'):
return ([plates['hybrid 6']], 'A10')
elif mutant == get_mutant('zyg-8'):
return ([plates['hybrid 6']], 'A12')
###############################################################################
print 'Adding scores to all_scores...\n'
###############################################################################
with open('input/AllNonJunkSupPrimaryScores.csv', 'rb') as csvfile:
csvreader = csv.reader(csvfile)
for row in csvreader:
clone = Clone(row[0], row[1], row[2])
gene = row[3]
temperature = row[4]
expID = int(row[5])
expDate = row[8]
score = int(row[6])
scorer = row[7]
mutant = get_mutant(gene)
if mutant.temperature != temperature:
continue
assert clone in all_scores
scored_mutants = all_scores[clone]
if mutant not in scored_mutants:
scored_mutants[mutant] = {}
experiments = scored_mutants[mutant]
if expID not in experiments:
experiments[expID] = ExperimentScoreData()
score_data = experiments[expID]
score_data.add_score(score)
score_data.add_scorer(scorer)
self.db_mutant = 'hybrid'
self.db_mutantAllele = 'hybrid'
else:
self.db_mutant = mutant.gene
self.db_mutantAllele = mutant.allele
def __str__(self):
return self.deep_well
def __repr__(self):
return self.__str__()
plates = {
'universal': Plate('universal', 'universal_F5', 'universal'),
'tba-1 1': Plate('tba-1 1', 'or346_F6', get_mutant('tba-1')),
'tba-1 2': Plate('tba-1 2', 'or346_F7', get_mutant('tba-1')),
'hcp-6': Plate('hcp-6', 'mr17_F3', get_mutant('hcp-6')),
'hybrid 1': Plate('hybrid 1', 'hybrid_F1', 'hybrid'),
'hybrid 2': Plate('hybrid 2', 'hybrid_F2', 'hybrid'),
'hybrid 3': Plate('hybrid 3', 'hybrid_F3', 'hybrid'),
'hybrid 4': Plate('hybrid 4', 'hybrid_F4', 'hybrid'),
'hybrid 5': Plate('hybrid 5', 'hybrid_F5', 'hybrid'),
'hybrid 6': Plate('hybrid 6', 'hybrid_F6', 'hybrid'),
}
skipped_wells = {
'universal': ['B02', 'G11'],
'tba-1 1': ['E02', 'G07', 'G11'],
'tba-1 2': ['H02', 'C07', 'A11'],
