Python Seq0.seq_count_base Beispiele

Beispiel #1

import P0.Seq0 as Seq0
gene_folder = "./sequences/"

gene_list = ["U5", "ADA", "FRAT1", "FXN"]
base_list = ["A", "C", "T", "G"]

print("------|EXERCISE 4|------")
for gene in gene_list:
    seq = Seq0.seq_read_fasta(gene_folder + gene + ".txt")
    print("Gene", gene)
    for base in base_list:
        print(base + ": " + str(Seq0.seq_count_base(seq, base)))

Beispiel #2

import P0.Seq0 as Seq0

GENE_FOLDER = "./Sequences/"

gene_list = ["U5", "ADA", "FRAT1", "FXN"]
base_list = ["A", "C", "T", "G"]

print("------| Exercise 4 |------")
for gene in gene_list:
    seq = Seq0.seq_read_fasta(GENE_FOLDER + gene + ".txt")
    print("\nGene " + gene)
    for base in base_list:
        print(base + ":", Seq0.seq_count_base(seq, base))

Beispiel #3

import P0.Seq0 as Seq0

gene_folder = "./Sequences/"
gene_list = ["U5", "ADA", "PRAT1", "FXN"]
b = ["A", "C", "T", "G"]
l = []
print("-----| Exercise 8 |------")
for gene in gene_list:
    sequence = Seq0.seq_read_fasta(gene_folder + gene + ".txt")
    print("Gene " + gene)
    for base in b:
        bases = Seq0.seq_count_base(sequence, base)
        l.append(bases)
        print(base + ":", bases)