def __init__(self,
scope,
defDir=genHDFDataFilepath(),
defSeries='%(day)d_%(month)d_series'):
"""Initialise the spooling controller.
Parameters
----------
scope : microscope instance
The currently active microscope class (see microscope.py)
defDir : string pattern
The default directory to save data to. Any keys of the form `%(<key>)`
will be substituted using the values defined in `PYME.fileUtils.nameUtils.dateDict`
defSeries : string pattern
This specifies a pattern for file naming. Keys will be substituted as for `defDir`
"""
self.scope = scope
self.spoolType = 'Queue'
#dtn = datetime.datetime.now()
#dateDict = {'username' : win32api.GetUserName(), 'day' : dtn.day, 'month' : dtn.month, 'year':dtn.year}
self._user_dir = None
self._base_dir = nameUtils.get_local_data_directory()
self._subdir = nameUtils.get_spool_subdir()
self.seriesStub = defSeries % nameUtils.dateDict
self.seriesCounter = 0
self._series_name = None
self.protocol = prot.NullProtocol
self.protocolZ = prot.NullZProtocol
self.onSpoolProgress = dispatch.Signal()
self.onSpoolStart = dispatch.Signal()
self.onSpoolStop = dispatch.Signal()
self._analysis_launchers = queue.Queue(3)
self.compressionSettings = HTTPSpooler.defaultCompSettings
def __init__(self,
scope,
defDir=genHDFDataFilepath(),
defSeries='%(day)d_%(month)d_series'):
"""Initialise the spooling controller.
Parameters
----------
scope : microscope instance
The currently active microscope class (see microscope.py)
defDir : string pattern
The default directory to save data to. Any keys of the form `%(<key>)`
will be substituted using the values defined in `PYME.fileUtils.nameUtils.dateDict`
defSeries : string pattern
This specifies a pattern for file naming. Keys will be substituted as for `defDir`
"""
self.scope = scope
if int(sys.version[0]) < 3:
#default to Queue for Py2
self.spoolType = 'Queue'
else:
#else default to file
self.spoolType = 'File'
#dtn = datetime.datetime.now()
#dateDict = {'username' : win32api.GetUserName(), 'day' : dtn.day, 'month' : dtn.month, 'year':dtn.year}
self._user_dir = None
self._base_dir = nameUtils.get_local_data_directory()
self._subdir = nameUtils.get_spool_subdir()
self.seriesStub = defSeries % nameUtils.dateDict
self.seriesCounter = 0
self._series_name = None
self.protocol = prot.NullProtocol
self.protocolZ = prot.NullZProtocol
self.onSpoolProgress = dispatch.Signal()
self.onSpoolStart = dispatch.Signal()
self.onSpoolStop = dispatch.Signal()
self._analysis_launchers = queue.Queue(3)
self._status_changed_condition = threading.Condition()
#settings which were managed by GUI
self.hdf_compression_level = 2 # zlib compression level that pytables should use (spool to file and queue)
self.z_stepped = False # z-step during acquisition
self.z_dwell = 100 # time to spend at each z level (if z_stepped == True)
self.cluster_h5 = False # spool to h5 on cluster (cluster of one)
self.pzf_compression_settings = HTTPSpooler.defaultCompSettings # only for cluster spooling
#check to see if we have a cluster
self._N_data_servers = len(
hybrid_ns.getNS('_pyme-http').get_advertised_services())
if self._N_data_servers > 0:
# switch to cluster as spool method if available.
self.SetSpoolMethod('Cluster')
if self._N_data_servers == 1:
self.cluster_h5 = True # we have a cluster of one