def GetDACC(input_data, **kwargs):
"""
#################################################################
Make DACC dictionary.
:param input_data: file object or sequence list.
:param phyche_index: physicochemical properties list.
:param all_property: bool, choose all physicochemical properties or not.
:param extra_phyche_index: dict, the key is the dinucleotide (string), and its corresponding value is a list.
It means user-defined phyche_index.
#################################################################
"""
if "k" in kwargs:
k = kwargs["k"]
else:
k = 2
if "lag" in kwargs:
lag = kwargs["lag"]
else:
lag = 2
if "phyche_index" in kwargs:
phyche_index = kwargs["phyche_index"]
else:
phyche_index = None
if "all_property" in kwargs:
all_property = kwargs["all_property"]
else:
all_property = False
if "extra_phyche_index" in kwargs:
extra_phyche_index = kwargs["extra_phyche_index"]
else:
extra_phyche_index = None
input_data = [input_data]
sequence_list, phyche_value = ReadyAcc(input_data, k, phyche_index,
all_property, extra_phyche_index)
from PyDNAacutil import MakeACVector, MakeCCVector
zipped = list(
zip(
MakeACVector(sequence_list, lag, phyche_value, k),
MakeCCVector(sequence_list, lag, phyche_value, k),
))
vec = [reduce(lambda x, y: x + y, e) for e in zipped]
dict_keys = ["DACC_%s" % i for i in range(1, len(vec[0]) + 1)]
res = dict(zip(dict_keys, vec[0]))
return res
def GetDCC(input_data, **kwargs):
"""
#################################################################
Make DCC vector.
:param input_data: file object or sequence list.
:param phyche_index: physicochemical properties list.
:param all_property: bool, choose all physicochemical properties or not.
:param extra_phyche_index: dict, the key is the dinucleotide (string), and its corresponding value is a list.
It means user-defined phyche_index.
#################################################################
"""
if 'k' in kwargs:
k = kwargs['k']
else:
k = 2
if 'lag' in kwargs:
lag = kwargs['lag']
else:
lag = 2
if 'phyche_index' in kwargs:
phyche_index = kwargs['phyche_index']
else:
phyche_index = None
if 'all_property' in kwargs:
all_property = kwargs['all_property']
else:
all_property = False
if 'extra_phyche_index' in kwargs:
extra_phyche_index = kwargs['extra_phyche_index']
else:
extra_phyche_index = None
input_data = [input_data]
sequence_list, phyche_value = ReadyAcc(input_data, k, phyche_index,
all_property, extra_phyche_index)
from PyDNAacutil import MakeCCVector
vec = MakeCCVector(sequence_list, lag, phyche_value, k)
dict_keys = ['DCC_%s' % i for i in range(1, len(vec[0]) + 1)]
res = dict(zip(dict_keys, vec[0]))
return res