def saveStackAsSimplestHDF5(self): filename = self._getOutputHDF5Filename() if not len(filename): return view = self._getCroppedView() ArraySave.save3DArrayAsHDF5(view, filename, labels = None, dtype=None, mode='simplest')
def saveStackAsSimpleHDF5(self): filename = self._getOutputHDF5Filename() if not len(filename): return ArraySave.save3DArrayAsHDF5(self._stack.data, filename, labels=None, dtype=None, mode='simple')
def saveStackAsNeXusPlus(self): filename = self._getOutputHDF5Filename() if not len(filename): return ArraySave.save3DArrayAsHDF5(self._stack.data, filename, labels=None, dtype=None, mode='nexus+')
def saveStackAsSimplestHDF5(self): filename = self._getOutputHDF5Filename() if not len(filename): return view = self._getCroppedView() ArraySave.save3DArrayAsHDF5(view, filename, labels=None, dtype=None, mode='simplest')
def saveStackAsNeXus(self, dtype=None, interpretation=None, compression=False): mcaIndex = self._stack.info.get('McaIndex', -1) if interpretation is None: if mcaIndex in [0]: interpretation = "image" else: interpretation = "spectrum" if interpretation not in ["spectrum", "image"]: raise ValueError("Unknown data interpretation %s" % interpretation) filename = self._getOutputHDF5Filename() if not len(filename): return # get only the seen stack portion view = self._getCroppedView() # the current graph axis is saved axes = [None] * len(self._stack.data.shape) labels = [None] * len(self._stack.data.shape) try: xLabel = qt.safe_str(self.mcaWidget.graph.getGraphXLabel()) except: xLabel = None try: xData, y, legend, info = self.mcaWidget.getActiveCurve()[:4] except: xData = self._mcaData0.x[0] xLabel = 'Channels' if interpretation == 'image': labels[0] = xLabel axes[0] = xData else: labels[-1] = xLabel axes[-1] = xData try: ArraySave.save3DArrayAsHDF5(view, filename, axes=axes, labels=labels, dtype=dtype, mode='nexus', mcaindex=mcaIndex, interpretation=interpretation, compression=compression) except: msg = qt.QMessageBox(self) msg.setIcon(qt.QMessageBox.Critical) msg.setWindowTitle("Save error") msg.setText("An error has occured while saving the data:") msg.setInformativeText(qt.safe_str(sys.exc_info()[1])) msg.setDetailedText(traceback.format_exc()) msg.exec_()
def saveStackAsNeXus(self, dtype=None, interpretation=None, compression=False): mcaIndex = self._stack.info.get('McaIndex', -1) if interpretation is None: if mcaIndex in [0]: interpretation = "image" else: interpretation = "spectrum" if interpretation not in ["spectrum", "image"]: raise ValueError("Unknown data interpretation %s" % interpretation) filename = self._getOutputHDF5Filename() if not len(filename): return # get only the seen stack portion view = self._getCroppedView() # the current graph axis is saved axes = [None] * len(self._stack.data.shape) labels = [None] * len(self._stack.data.shape) try: xLabel = qt.safe_str(self.mcaWidget.graph.getGraphXLabel()) except: xLabel = None try: xData, y, legend, info = self.mcaWidget.getActiveCurve()[:4] except: xData = self._mcaData0.x[0] xLabel = 'Channels' if interpretation == 'image': labels[0] = xLabel axes[0] = xData else: labels[-1] = xLabel axes[-1] = xData try: ArraySave.save3DArrayAsHDF5(view, filename, axes=axes, labels=labels, dtype=dtype, mode='nexus', mcaindex=mcaIndex, interpretation=interpretation, compression=compression) except: msg = qt.QMessageBox(self) msg.setIcon(qt.QMessageBox.Critical) msg.setWindowTitle("Save error") msg.setText("An error has occured while saving the data:") msg.setInformativeText(qt.safe_str(sys.exc_info()[1])) msg.setDetailedText(traceback.format_exc()) msg.exec_()
def saveStackAsSimplestHDF5(self): filename = self._getOutputHDF5Filename() if not len(filename): return ArraySave.save3DArrayAsHDF5(self._stack.data, filename, labels = None, dtype=None, mode='simplest')
def saveStackAsNeXusPlus(self): filename = self._getOutputHDF5Filename() if not len(filename): return ArraySave.save3DArrayAsHDF5(self._stack.data, filename, labels = None, dtype=None, mode='nexus+')